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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035334 through 18771 annotations produced 1 hits



thioredoxin (CG8993):

Annotation Number : CG8993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035334
Gbrowse : chr3L:2372198-2372881 (+) // 99.36 //
Probeset : 1641655_at
Accessions : protein= NP_647716;, nucleotide= NM_139459;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred fr
FlyMine data for FBgn0035334.
BDGP gene expression has embryonic in situ data for CG8993: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0035334 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035334 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain500 84 of 4 1.30None
Head475 424 of 4 1.20None
Eye403 164 of 4 1.03None
Thoracicoabdominal ganglion539 244 of 4 1.40Up
Salivary gland867 344 of 4 2.22Up
Crop457 224 of 4 1.20None
Midgut610 34 of 4 1.60Up
Tubule326 54 of 4 0.80Down
Hindgut732 174 of 4 1.90Up
Heart866 264 of 4 2.22Up
Fat body908 744 of 4 2.33Up
Ovary250 74 of 4 0.60Down
Testis144 54 of 4 0.40Down
Male accessory glands339 124 of 4 0.90None
Virgin spermatheca284 94 of 4 0.73Down
Mated spermatheca254 114 of 4 0.65Down
Adult carcass817 464 of 4 2.10Up
Larval CNS328 284 of 4 0.84None
Larval Salivary gland339 54 of 4 0.87None
Larval midgut349 74 of 4 0.90None
Larval tubule617 74 of 4 1.60Up
Larval hindgut409 94 of 4 1.05None
Larval fat body371 364 of 4 1.00None
Larval trachea366 294 of 4 0.94None
Larval carcass548 434 of 4 1.41Up
S2 cells (growing)355 134 of 4 0.91None
Whole fly390 324 of 4

Looking for FBgn0035334. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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