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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035335 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L23 (mRpL23):

Annotation Number : CG1320
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035335
Gbrowse : chr3L:2372840-2373451 (-) // 100.0 //
Probeset : 1634414_at
Accessions : protein= NP_001137873; /// NP_523889;, nucleotide= NM_001144401; /// NM_079165;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome /
FlyMine data for FBgn0035335.
BDGP gene expression has embryonic in situ data for mRpL23: 13 pix of staining in 11 body parts.
VDRC has 4 RNAi stocks for FBgn0035335 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain401 ± 134 of 4 1.60Up
Head242 ± 124 of 4 1.00None
Eye148 ± 54 of 4 0.60Down
Thoracicoabdominal ganglion398 ± 204 of 4 1.60Up
Salivary gland96 ± 24 of 4 0.39Down
Crop106 ± 84 of 4 0.40Down
Midgut125 ± 54 of 4 0.50Down
Tubule99 ± 54 of 4 0.40Down
Hindgut215 ± 34 of 4 0.90None
Heart148 ± 74 of 4 0.60Down
Fat body183 ± 274 of 4 0.74Down
Ovary328 ± 34 of 4 1.30Up
Testis53 ± 04 of 4 0.20Down
Male accessory glands97 ± 74 of 4 0.40Down
Virgin spermatheca59 ± 24 of 4 0.24Down
Mated spermatheca87 ± 84 of 4 0.35Down
Adult carcass192 ± 54 of 4 0.80Down
Larval CNS253 ± 334 of 4 1.02None
Larval Salivary gland108 ± 54 of 4 0.44Down
Larval midgut91 ± 94 of 4 0.37Down
Larval tubule57 ± 54 of 4 0.20Down
Larval hindgut241 ± 194 of 4 0.97None
Larval fat body28 ± 34 of 4 0.10Down
Larval trachea228 ± 344 of 4 0.92None
Larval carcass120 ± 114 of 4 0.48Down
S2 cells (growing)278 ± 74 of 4 1.12None
Whole fly248 ± 134 of 4

Looking for FBgn0035335. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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