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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035336 through 18771 annotations produced 1 hits



(CG9004):

Annotation Number : CG9004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035336
Gbrowse : chr3L:2373726-2376488 (+) // 100.0 //
Probeset : 1625269_at
Accessions : protein= NP_647717;, nucleotide= NM_139460;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structur
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0035336.
VDRC has 1 RNAi stocks for FBgn0035336 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 14 of 4 0.90None
Head40 ± 54 of 4 0.60Down
Eye35 ± 24 of 4 0.56Down
Thoracicoabdominal ganglion68 ± 44 of 4 1.10None
Salivary gland44 ± 14 of 4 0.70Down
Crop48 ± 34 of 4 0.80Down
Midgut33 ± 24 of 4 0.50Down
Tubule36 ± 14 of 4 0.60Down
Hindgut40 ± 24 of 4 0.60Down
Heart26 ± 04 of 4 0.42Down
Fat body41 ± 34 of 4 0.65Down
Ovary182 ± 64 of 4 2.90Up
Testis38 ± 14 of 4 0.60Down
Male accessory glands58 ± 24 of 4 0.90None
Virgin spermatheca40 ± 04 of 4 0.64Down
Mated spermatheca54 ± 04 of 4 0.86Down
Adult carcass32 ± 34 of 4 0.50Down
Larval CNS78 ± 84 of 4 1.24Up
Larval Salivary gland47 ± 34 of 4 0.75Down
Larval midgut20 ± 13 of 4 0.33Down
Larval tubule26 ± 24 of 4 0.40Down
Larval hindgut37 ± 34 of 4 0.59Down
Larval fat body31 ± 14 of 4 0.50Down
Larval trachea49 ± 64 of 4 0.78Down
Larval carcass48 ± 84 of 4 0.77None
S2 cells (growing)46 ± 24 of 4 0.73Down
Whole fly63 ± 24 of 4

Looking for FBgn0035336. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime