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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035337 through 18771 annotations produced 1 hits



(CG15877):

Annotation Number : CG15877
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035337
Gbrowse : chr3L:2376543-2377432 (-) // 100.0 //
Probeset : 1626347_at
Accessions : protein= NP_647718;, nucleotide= NM_139461;
FlyMine data for FBgn0035337.
VDRC has 2 RNAi stocks for FBgn0035337 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 0.50Down
Head34 24 of 4 0.40Down
Eye43 54 of 4 0.54Down
Thoracicoabdominal ganglion32 34 of 4 0.40Down
Salivary gland29 42 of 4 0.36Down
Crop48 04 of 4 0.60Down
Midgut31 24 of 4 0.40Down
Tubule37 34 of 4 0.50Down
Hindgut32 04 of 4 0.40Down
Heart31 14 of 4 0.39Down
Fat body22 44 of 4 0.27Down
Ovary224 54 of 4 2.80Up
Testis18 14 of 4 0.20Down
Male accessory glands99 14 of 4 1.20Up
Virgin spermatheca34 24 of 4 0.43Down
Mated spermatheca42 44 of 4 0.52Down
Adult carcass29 54 of 4 0.40Down
Larval CNS66 74 of 4 0.82Down
Larval Salivary gland67 14 of 4 0.83Down
Larval midgut19 14 of 4 0.24Down
Larval tubule41 34 of 4 0.50Down
Larval hindgut32 14 of 4 0.40Down
Larval fat body29 34 of 4 0.40Down
Larval trachea74 54 of 4 0.91None
Larval carcass41 64 of 4 0.51Down
S2 cells (growing)45 14 of 4 0.55Down
Whole fly81 44 of 4

Looking for FBgn0035337. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime