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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035343 through 18771 annotations produced 1 hits



(CG16762):

Annotation Number : CG16762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035343
Gbrowse : chr3L:2474766-2475594 (-) // 100.0 //
Probeset : 1640881_at
Accessions : protein= NP_647722;, nucleotide= NM_139465;
FlyMine data for FBgn0035343.
BDGP gene expression has embryonic in situ data for CG16762: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head5 10 of 4 0.10Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland2 00 of 4 0.03Down
Crop0 00 of 4 0.00Down
Midgut6 20 of 4 0.10Down
Tubule2840 15953 of 431.90None
Hindgut1 00 of 4 0.00Down
Heart5 10 of 4 0.06Down
Fat body8 121 of 4 0.10Down
Ovary2 00 of 4 0.00Down
Testis6 00 of 4 0.10Down
Male accessory glands4 00 of 4 0.00Down
Virgin spermatheca3 10 of 4 0.04Down
Mated spermatheca5 10 of 4 0.06Down
Adult carcass10 71 of 4 0.10Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland4 10 of 4 0.05Down
Larval midgut2 00 of 4 0.03Down
Larval tubule3578 1024 of 440.20Up
Larval hindgut78 134 of 4 0.88None
Larval fat body16 71 of 4 0.20Down
Larval trachea3 20 of 4 0.04Down
Larval carcass9 21 of 4 0.11Down
S2 cells (growing)3 00 of 4 0.04Down
Whole fly89 204 of 4

Looking for FBgn0035343. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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