FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035346 through 18771 annotations produced 1 hits

(CG1146):

Annotation Number : CG1146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035346
Gbrowse : chr3L:2488818-2492613 (+) // 100.0 //
Probeset : 1637605_s_at
Accessions : protein= NP_647725; /// NP_728749; /// NP_728750;, nucleotide= NM_139468; /// NM_167950; /// NM_167951;
FlyMine data for FBgn0035346.
BDGP gene expression has embryonic in situ data for CG1146: 40 pix of staining in 14 body parts.
VDRC has 3 RNAi stocks for FBgn0035346 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	96 ± 2	4 of 4	0.40	Down
Head	178 ± 4	4 of 4	0.70	None
Eye	93 ± 3	4 of 4	0.35	Down
Thoracicoabdominal ganglion	101 ± 4	4 of 4	0.40	Down
Salivary gland	538 ± 10	4 of 4	2.00	Up
Crop	760 ± 57	4 of 4	2.80	Up
Midgut	181 ± 2	4 of 4	0.70	None
Tubule	111 ± 27	4 of 4	0.40	Down
Hindgut	321 ± 9	4 of 4	1.20	None
Heart	202 ± 9	4 of 4	0.75	None
Fat body	43 ± 4	4 of 4	0.16	Down
Ovary	151 ± 8	4 of 4	0.60	Down
Testis	885 ± 39	4 of 4	3.30	Up
Male accessory glands	282 ± 19	4 of 4	1.00	None
Virgin spermatheca	66 ± 1	4 of 4	0.24	Down
Mated spermatheca	52 ± 3	4 of 4	0.20	Down
Adult carcass	385 ± 23	4 of 4	1.40	Up
Larval CNS	21 ± 4	4 of 4	0.08	Down
Larval Salivary gland	24 ± 4	3 of 4	0.09	Down
Larval midgut	158 ± 10	4 of 4	0.59	Down
Larval tubule	496 ± 38	4 of 4	1.80	Up
Larval hindgut	238 ± 27	4 of 4	0.88	None
Larval fat body	101 ± 47	4 of 4	0.40	Down
Larval trachea	157 ± 21	4 of 4	0.58	Down
Larval carcass	119 ± 7	4 of 4	0.44	Down
S2 cells (growing)	351 ± 11	4 of 4	1.30	None
Whole fly	269 ± 31	4 of 4

Looking for FBgn0035346. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720