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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035346 through 18771 annotations produced 1 hits



(CG1146):

Annotation Number : CG1146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035346
Gbrowse : chr3L:2488818-2492613 (+) // 100.0 //
Probeset : 1637605_s_at
Accessions : protein= NP_647725; /// NP_728749; /// NP_728750;, nucleotide= NM_139468; /// NM_167950; /// NM_167951;
FlyMine data for FBgn0035346.
BDGP gene expression has embryonic in situ data for CG1146: 40 pix of staining in 14 body parts.
VDRC has 3 RNAi stocks for FBgn0035346 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 24 of 4 0.40Down
Head178 44 of 4 0.70None
Eye93 34 of 4 0.35Down
Thoracicoabdominal ganglion101 44 of 4 0.40Down
Salivary gland538 104 of 4 2.00Up
Crop760 574 of 4 2.80Up
Midgut181 24 of 4 0.70None
Tubule111 274 of 4 0.40Down
Hindgut321 94 of 4 1.20None
Heart202 94 of 4 0.75None
Fat body43 44 of 4 0.16Down
Ovary151 84 of 4 0.60Down
Testis885 394 of 4 3.30Up
Male accessory glands282 194 of 4 1.00None
Virgin spermatheca66 14 of 4 0.24Down
Mated spermatheca52 34 of 4 0.20Down
Adult carcass385 234 of 4 1.40Up
Larval CNS21 44 of 4 0.08Down
Larval Salivary gland24 43 of 4 0.09Down
Larval midgut158 104 of 4 0.59Down
Larval tubule496 384 of 4 1.80Up
Larval hindgut238 274 of 4 0.88None
Larval fat body101 474 of 4 0.40Down
Larval trachea157 214 of 4 0.58Down
Larval carcass119 74 of 4 0.44Down
S2 cells (growing)351 114 of 4 1.30None
Whole fly269 314 of 4

Looking for FBgn0035346. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime