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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035348 through 18771 annotations produced 1 hits



(CG16758):

Annotation Number : CG16758
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035348
Gbrowse : chr3L:2498703-2503584 (-) // 100.0 //
Probeset : 1626799_a_at
Accessions : protein= NP_647727; /// NP_728752; /// NP_995969; /// NP_995970;, nucleotide= NM_139470; /// NM_167952; /// NM_206247; /// NM_206248;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0009116 // nucleoside metaboli
FlyMine data for FBgn0035348.
Homophila reports that CG16758 is a close match (3e-83) to human gene NP (NP_000261), a gene associated with Nucleoside phosphorylase deficiency, immunodeficiency due to (3).
BioGrid reports that CG16758 interacts with CG4153 .
TRiP has 1 RNAi stocks for FBgn0035348 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035348 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 13 of 4 0.50Down
Head16 ± 14 of 4 1.00None
Eye27 ± 14 of 4 1.69Up
Thoracicoabdominal ganglion10 ± 03 of 4 0.60None
Salivary gland27 ± 41 of 4 1.69None
Crop96 ± 94 of 4 6.00Up
Midgut57 ± 64 of 4 3.60Up
Tubule16 ± 03 of 4 1.00None
Hindgut37 ± 64 of 4 2.30Up
Heart26 ± 34 of 4 1.62None
Fat body21 ± 34 of 4 1.36None
Ovary11 ± 14 of 4 0.70None
Testis26 ± 44 of 4 1.60None
Male accessory glands38 ± 34 of 4 2.40Up
Virgin spermatheca19 ± 24 of 4 1.18None
Mated spermatheca15 ± 24 of 4 0.97None
Adult carcass17 ± 34 of 4 1.10None
Larval CNS22 ± 24 of 4 1.40None
Larval Salivary gland6 ± 21 of 4 0.41Down
Larval midgut58 ± 44 of 4 3.63Up
Larval tubule25 ± 34 of 4 1.60None
Larval hindgut42 ± 14 of 4 2.62Up
Larval fat body23 ± 41 of 4 1.50None
Larval trachea25 ± 54 of 4 1.60Up
Larval carcass48 ± 84 of 4 3.01Up
S2 cells (growing)8 ± 13 of 4 0.50Down
Whole fly16 ± 23 of 4

Looking for FBgn0035348. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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