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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035355 through 18771 annotations produced 1 hits



(CG16985):

Annotation Number : CG16985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035355
Gbrowse : chr3L:2599301-2600255 (+) // 100.0 //
Probeset : 1633701_at
Accessions : protein= NP_647730;, nucleotide= NM_139473;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035355.
BDGP gene expression has embryonic in situ data for CG16985: 4 pix of staining in 1 body parts.
BioGrid reports that CG16985 interacts with CG5920 CG17903 CG2985 CG32158 CG3800 CG3937 CG4722 CG7111 CG8857 .
VDRC has 2 RNAi stocks for FBgn0035355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 24 of 4 0.30Down
Head261 ± 214 of 4 0.70None
Eye127 ± 44 of 4 0.36Down
Thoracicoabdominal ganglion172 ± 84 of 4 0.50Down
Salivary gland372 ± 194 of 4 1.04None
Crop408 ± 214 of 4 1.10None
Midgut3091 ± 484 of 4 8.60Up
Tubule1676 ± 234 of 4 4.70Up
Hindgut507 ± 154 of 4 1.40Up
Heart404 ± 184 of 4 1.13None
Fat body389 ± 364 of 4 1.08None
Ovary123 ± 34 of 4 0.30Down
Testis60 ± 14 of 4 0.20Down
Male accessory glands112 ± 64 of 4 0.30Down
Virgin spermatheca436 ± 164 of 4 1.21None
Mated spermatheca273 ± 124 of 4 0.76None
Adult carcass314 ± 74 of 4 0.90None
Larval CNS158 ± 124 of 4 0.44Down
Larval Salivary gland248 ± 34 of 4 0.69None
Larval midgut195 ± 124 of 4 0.54Down
Larval tubule328 ± 404 of 4 0.90None
Larval hindgut206 ± 144 of 4 0.57Down
Larval fat body94 ± 54 of 4 0.30Down
Larval trachea105 ± 154 of 4 0.30Down
Larval carcass213 ± 384 of 4 0.59Down
S2 cells (growing)269 ± 84 of 4 0.75None
Whole fly359 ± 394 of 4

Looking for FBgn0035355. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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