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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035357 through 18771 annotations produced 1 hits



/// CG1244 (CG42245 /// MEP-1):

Annotation Number : CG1244
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035357 /// FBgn0250911
Gbrowse : chr3L:2631719-2641977 (+) // 100.0 //
Probeset : 1638162_s_at
Accessions : protein= NP_001137875; /// NP_001137876; /// NP_647733; /// NP_728761; /// NP_728762; /// NP_728763; /// NP_728764; /// NP_728765;, nucleotide= NM_001144403; /// NM_001144404; /// NM_139476; /// NM_167958; /// NM_167959; /// NM_167960; /// NM_167961; /// NM_167962;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : "0008270 // zinc ion binding // inferred from electronic annotation /// 0042623 // ATPase activity
FlyMine data for FBgn0035357 /// FBgn0250911.
BioGrid reports that CG1244 interacts with CG14224 CG4276 CG8614 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain296 ± 94 of 4 2.50Up
Head115 ± 74 of 4 1.00None
Eye118 ± 74 of 4 0.99None
Thoracicoabdominal ganglion217 ± 44 of 4 1.80Up
Salivary gland118 ± 74 of 4 0.99None
Crop104 ± 54 of 4 0.90None
Midgut73 ± 24 of 4 0.60Down
Tubule114 ± 34 of 4 1.00None
Hindgut93 ± 44 of 4 0.80None
Heart75 ± 44 of 4 0.63Down
Fat body83 ± 104 of 4 0.69None
Ovary318 ± 54 of 4 2.70Up
Testis30 ± 24 of 4 0.30Down
Male accessory glands142 ± 74 of 4 1.20None
Virgin spermatheca60 ± 24 of 4 0.50Down
Mated spermatheca62 ± 14 of 4 0.52Down
Adult carcass64 ± 34 of 4 0.50Down
Larval CNS433 ± 144 of 4 3.62Up
Larval Salivary gland210 ± 84 of 4 1.76Up
Larval midgut78 ± 34 of 4 0.65None
Larval tubule91 ± 34 of 4 0.80None
Larval hindgut117 ± 24 of 4 0.98None
Larval fat body66 ± 64 of 4 0.60Down
Larval trachea166 ± 174 of 4 1.39Up
Larval carcass126 ± 44 of 4 1.06None
S2 cells (growing)304 ± 84 of 4 2.54Up
Whole fly119 ± 134 of 4

Looking for FBgn0035357. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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