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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035358 through 18771 annotations produced 1 hits


(CG14949):

Annotation Number : CG14949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035358
Gbrowse : chr3L:2642412-2643346 (-) // 100.0 //
Probeset : 1627682_at
Accessions : protein= NP_647734;, nucleotide= NM_139477;
FlyMine data for FBgn0035358.
BioGrid reports that CG14949 interacts with CG6576 .
VDRC has 1 RNAi stocks for FBgn0035358 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland6 ± 20 of 4 0.06Down
Crop17 ± 23 of 4 0.20Down
Midgut10 ± 00 of 4 0.10Down
Tubule6 ± 40 of 4 0.10Down
Hindgut4657 ± 1054 of 441.90Up
Heart3 ± 00 of 4 0.03Down
Fat body4 ± 40 of 4 0.04Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca2 ± 00 of 4 0.02Down
Adult carcass8 ± 21 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut2 ± 00 of 4 0.02Down
Larval tubule1561 ± 524 of 414.00Up
Larval hindgut956 ± 554 of 4 8.60Up
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea8 ± 121 of 4 0.07Down
Larval carcass201 ± 204 of 4 1.81Up
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly111 ± 84 of 4

Looking for FBgn0035358. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime