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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035359 through 18771 annotations produced 1 hits



(CG1143):

Annotation Number : CG1143
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035359
Gbrowse : chr3L:2645372-2646499 (+) // 100.0 //
Probeset : 1638343_at
Accessions : protein= NP_647735;, nucleotide= NM_139478;
FlyMine data for FBgn0035359.
VDRC has 2 RNAi stocks for FBgn0035359 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 00 of 4 0.20Down
Head66 ± 24 of 4 0.90None
Eye32 ± 44 of 4 0.46Down
Thoracicoabdominal ganglion14 ± 10 of 4 0.20Down
Salivary gland6 ± 20 of 4 0.09Down
Crop27 ± 22 of 4 0.40Down
Midgut11 ± 20 of 4 0.20Down
Tubule14 ± 90 of 4 0.20Down
Hindgut4019 ± 1424 of 456.00Up
Heart24 ± 14 of 4 0.34Down
Fat body9 ± 50 of 4 0.13Down
Ovary3 ± 00 of 4 0.00Down
Testis31 ± 04 of 4 0.40Down
Male accessory glands14 ± 20 of 4 0.20Down
Virgin spermatheca7 ± 00 of 4 0.10Down
Mated spermatheca4 ± 10 of 4 0.06Down
Adult carcass134 ± 74 of 4 1.90Up
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland8 ± 21 of 4 0.12Down
Larval midgut5 ± 10 of 4 0.08Down
Larval tubule17 ± 42 of 4 0.20Down
Larval hindgut3251 ± 1414 of 445.33Up
Larval fat body7 ± 21 of 4 0.10Down
Larval trachea23 ± 201 of 4 0.32Down
Larval carcass347 ± 414 of 4 4.84Up
S2 cells (growing)14 ± 02 of 4 0.20Down
Whole fly71 ± 64 of 4

Looking for FBgn0035359. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime