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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035370 through 18771 annotations produced 1 hits


Annotation Number : CG1240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035370
Gbrowse : chr3L:2766995-2768399 (+) // 100.0 //
Probeset : 1636036_at
Accessions : protein= NP_647745;, nucleotide= NM_139488;
FlyMine data for FBgn0035370.
BDGP gene expression has embryonic in situ data for CG1240: 8 pix of staining in 2 body parts.
BioGrid reports that CG1240 interacts with CG16972 .
VDRC has 1 RNAi stocks for FBgn0035370 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain385 114 of 4 1.00None
Head245 34 of 4 0.70Down
Eye234 24 of 4 0.64Down
Thoracicoabdominal ganglion374 84 of 4 1.00None
Salivary gland390 164 of 4 1.06None
Crop233 64 of 4 0.60Down
Midgut244 74 of 4 0.70Down
Tubule241 124 of 4 0.70Down
Hindgut264 44 of 4 0.70None
Heart174 54 of 4 0.47Down
Fat body210 134 of 4 0.57Down
Ovary682 114 of 4 1.90Up
Testis358 114 of 4 1.00None
Male accessory glands611 194 of 4 1.70Up
Virgin spermatheca249 64 of 4 0.68Down
Mated spermatheca256 64 of 4 0.70Down
Adult carcass183 84 of 4 0.50Down
Larval CNS1322 584 of 4 3.60Up
Larval Salivary gland1044 224 of 4 2.84Up
Larval midgut286 54 of 4 0.78None
Larval tubule403 94 of 4 1.10None
Larval hindgut422 124 of 4 1.15None
Larval fat body338 104 of 4 0.90None
Larval trachea613 884 of 4 1.67Up
Larval carcass562 204 of 4 1.53Up
S2 cells (growing)843 214 of 4 2.30Up
Whole fly367 344 of 4

Looking for FBgn0035370. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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