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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035371 through 18771 annotations produced 1 hits


Annotation Number : CG9977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035371
Gbrowse : chr3L:2769347-2772323 (-) // 100.0 //
Probeset : 1635976_at
Accessions : protein= NP_647746;, nucleotide= NM_139489;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004013 // adenosylhomocysteinase activity // i
FlyMine data for FBgn0035371.
BDGP gene expression has embryonic in situ data for CG9977: 18 pix of staining in 10 body parts.
Homophila reports that CG9977 is a close match (3e-126) to human gene AHCY;SAHH (NP_000678), a gene associated with Hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (3).
TRiP has 1 RNAi stocks for FBgn0035371 available for purchase.
VDRC has 5 RNAi stocks for FBgn0035371 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 34 of 4 2.30Up
Head72 74 of 4 1.20None
Eye67 44 of 4 1.11None
Thoracicoabdominal ganglion104 124 of 4 1.70Up
Salivary gland118 74 of 4 1.96Up
Crop84 74 of 4 1.40Up
Midgut169 74 of 4 2.80Up
Tubule37 32 of 4 0.60Down
Hindgut121 84 of 4 2.00Up
Heart27 53 of 4 0.46Down
Fat body7 50 of 4 0.13Down
Ovary83 44 of 4 1.40Up
Testis88 54 of 4 1.50Up
Male accessory glands100 94 of 4 1.70Up
Virgin spermatheca10 10 of 4 0.16Down
Mated spermatheca8 20 of 4 0.15Down
Adult carcass41 51 of 4 0.70Down
Larval CNS91 124 of 4 1.52Up
Larval Salivary gland75 104 of 4 1.25None
Larval midgut190 84 of 4 3.16Up
Larval tubule104 24 of 4 1.70Up
Larval hindgut145 64 of 4 2.41Up
Larval fat body39 22 of 4 0.60Down
Larval trachea49 64 of 4 0.82None
Larval carcass83 154 of 4 1.38None
S2 cells (growing)188 64 of 4 3.13Up
Whole fly60 34 of 4

Looking for FBgn0035371. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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