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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035379 through 18771 annotations produced 1 hits

CG9972 (spz5):

Annotation Number : CG9972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035379
Gbrowse : chr3L:2883637-2892164 (-) // 100.0 //
Probeset : 1636668_at
Accessions : protein= NP_647753;, nucleotide= NM_139496;
Interpro : 0008083 // growth factor activity // inferred from mutant phenotype
FlyMine data for FBgn0035379.
BDGP gene expression has embryonic in situ data for CG9972: 14 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0035379 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head45 44 of 4 3.10Up
Eye33 44 of 4 2.24Up
Thoracicoabdominal ganglion8 20 of 4 0.60None
Salivary gland3 10 of 4 0.26Down
Crop17 33 of 4 1.20None
Midgut6 10 of 4 0.40Down
Tubule2 00 of 4 0.20Down
Hindgut2 00 of 4 0.20Down
Heart8 00 of 4 0.60Down
Fat body10 50 of 4 0.68None
Ovary2 00 of 4 0.20Down
Testis22 34 of 4 1.50None
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.25Down
Mated spermatheca5 20 of 4 0.36Down
Adult carcass39 14 of 4 2.70Up
Larval CNS10 20 of 4 0.69Down
Larval Salivary gland8 20 of 4 0.59None
Larval midgut13 10 of 4 0.94None
Larval tubule11 30 of 4 0.70None
Larval hindgut20 23 of 4 1.40None
Larval fat body3 10 of 4 0.30Down
Larval trachea531 334 of 435.93Up
Larval carcass21 61 of 4 1.42None
S2 cells (growing)4 10 of 4 0.32Down
Whole fly14 13 of 4

Looking for FBgn0035379. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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