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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035382 through 18771 annotations produced 1 hits



Odorant receptor 63a (Or63a):

Annotation Number : CG9969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035382
Gbrowse : chr3L:2961743-2963616 (+) // 100.0 //
Probeset : 1636616_at
Accessions : protein= NP_001163331; /// NP_523895;, nucleotide= NM_001169860; /// NM_079171;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0035382.
VDRC has 2 RNAi stocks for FBgn0035382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 14 of 4 9.90Up
Head8 ± 12 of 4 2.00Up
Eye4 ± 10 of 4 1.06None
Thoracicoabdominal ganglion24 ± 14 of 4 5.90Up
Salivary gland10 ± 30 of 4 2.62None
Crop7 ± 10 of 4 1.70None
Midgut4 ± 10 of 4 1.20None
Tubule7 ± 00 of 4 1.80Up
Hindgut3 ± 10 of 4 0.90None
Heart3 ± 00 of 4 0.73None
Fat body9 ± 11 of 4 2.17Up
Ovary3 ± 00 of 4 0.80None
Testis1 ± 00 of 4 0.30None
Male accessory glands2 ± 00 of 4 0.50None
Virgin spermatheca11 ± 01 of 4 2.70Up
Mated spermatheca10 ± 00 of 4 2.47Up
Adult carcass5 ± 10 of 4 1.40None
Larval CNS4 ± 20 of 4 1.01None
Larval Salivary gland10 ± 21 of 4 2.42None
Larval midgut7 ± 21 of 4 1.74None
Larval tubule11 ± 13 of 4 2.70Up
Larval hindgut5 ± 02 of 4 1.20None
Larval fat body7 ± 11 of 4 1.80None
Larval trachea3 ± 22 of 4 0.95None
Larval carcass5 ± 10 of 4 1.24None
S2 cells (growing)3 ± 00 of 4 0.87None
Whole fly4 ± 10 of 4

Looking for FBgn0035382. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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