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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035384 through 18771 annotations produced 1 hits


Annotation Number : CG2113
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035384
Gbrowse : chr3L:2995179-2996158 (+) // 100.0 //
Probeset : 1633912_at
Accessions : protein= NP_647757;, nucleotide= NM_139500;
FlyMine data for FBgn0035384.
BDGP gene expression has embryonic in situ data for CG2113: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0035384 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head6 00 of 4 0.10Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion5 21 of 4 0.00Down
Salivary gland13 31 of 4 0.13Down
Crop3 10 of 4 0.00Down
Midgut7 10 of 4 0.10Down
Tubule3 00 of 4 0.00Down
Hindgut6 11 of 4 0.10Down
Heart4 10 of 4 0.04Down
Fat body8 20 of 4 0.08Down
Ovary3 11 of 4 0.00Down
Testis1030 134 of 4 9.60Up
Male accessory glands6 11 of 4 0.10Down
Virgin spermatheca2 10 of 4 0.02Down
Mated spermatheca3 10 of 4 0.03Down
Adult carcass9 21 of 4 0.10Down
Larval CNS2 10 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.03Down
Larval midgut7 30 of 4 0.07Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut5 11 of 4 0.05Down
Larval fat body93 474 of 4 0.90None
Larval trachea7 61 of 4 0.07Down
Larval carcass4 10 of 4 0.04Down
S2 cells (growing)3 10 of 4 0.03Down
Whole fly107 104 of 4

Looking for FBgn0035384. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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