FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035388 through 18771 annotations produced 1 hits

(CG2162):

Annotation Number : CG2162
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035388
Gbrowse : chr3L:3035197-3040471 (+) // 100.0 //
Probeset : 1630358_at
Accessions : protein= NP_001163332; /// NP_647760;, nucleotide= NM_001169861; /// NM_139503;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation
FlyMine data for FBgn0035388.
BDGP gene expression has embryonic in situ data for CG2162: 23 pix of staining in 14 body parts.
VDRC has 1 RNAi stocks for FBgn0035388 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	233 ± 8	4 of 4	0.90	None
Head	169 ± 18	4 of 4	0.60	Down
Eye	101 ± 8	4 of 4	0.38	Down
Thoracicoabdominal ganglion	198 ± 4	4 of 4	0.70	Down
Salivary gland	196 ± 10	4 of 4	0.74	Down
Crop	179 ± 6	4 of 4	0.70	Down
Midgut	122 ± 6	4 of 4	0.50	Down
Tubule	246 ± 20	4 of 4	0.90	None
Hindgut	254 ± 15	4 of 4	1.00	None
Heart	115 ± 9	4 of 4	0.43	Down
Fat body	252 ± 18	4 of 4	0.94	None
Ovary	600 ± 8	4 of 4	2.20	Up
Testis	236 ± 30	4 of 4	0.90	None
Male accessory glands	115 ± 4	4 of 4	0.40	Down
Virgin spermatheca	262 ± 16	4 of 4	0.98	None
Mated spermatheca	246 ± 1	4 of 4	0.92	None
Adult carcass	174 ± 8	4 of 4	0.70	Down
Larval CNS	248 ± 10	4 of 4	0.93	None
Larval Salivary gland	258 ± 5	4 of 4	0.97	None
Larval midgut	226 ± 31	4 of 4	0.85	None
Larval tubule	232 ± 13	4 of 4	0.90	None
Larval hindgut	208 ± 6	4 of 4	0.78	None
Larval fat body	183 ± 17	4 of 4	0.70	Down
Larval trachea	104 ± 5	4 of 4	0.39	Down
Larval carcass	235 ± 8	4 of 4	0.88	None
S2 cells (growing)	194 ± 6	4 of 4	0.73	Down
Whole fly	267 ± 19	4 of 4

Looking for FBgn0035388. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720