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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035393 through 18771 annotations produced 1 hits



(CG16753):

Annotation Number : CG16753
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035393
Gbrowse : chr3L:3055101-3055844 (+) // 100.0 //
Probeset : 1627667_at
Accessions : protein= NP_647764;, nucleotide= NM_139507;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035393.
BioGrid reports that CG16753 interacts with CG31151 CG8328 .
VDRC has 1 RNAi stocks for FBgn0035393 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 24 of 4 0.60Down
Head50 ± 34 of 4 0.40Down
Eye44 ± 34 of 4 0.36Down
Thoracicoabdominal ganglion66 ± 34 of 4 0.50Down
Salivary gland18 ± 40 of 4 0.15Down
Crop27 ± 14 of 4 0.20Down
Midgut33 ± 14 of 4 0.30Down
Tubule162 ± 444 of 4 1.30None
Hindgut29 ± 14 of 4 0.20Down
Heart50 ± 24 of 4 0.41Down
Fat body46 ± 44 of 4 0.37Down
Ovary233 ± 34 of 4 1.90Up
Testis43 ± 24 of 4 0.30Down
Male accessory glands174 ± 74 of 4 1.40Up
Virgin spermatheca39 ± 54 of 4 0.32Down
Mated spermatheca69 ± 44 of 4 0.56Down
Adult carcass45 ± 34 of 4 0.40Down
Larval CNS182 ± 64 of 4 1.47Up
Larval Salivary gland64 ± 54 of 4 0.52Down
Larval midgut30 ± 24 of 4 0.24Down
Larval tubule22 ± 24 of 4 0.20Down
Larval hindgut48 ± 64 of 4 0.39Down
Larval fat body40 ± 24 of 4 0.30Down
Larval trachea208 ± 394 of 4 1.68Up
Larval carcass66 ± 74 of 4 0.53Down
S2 cells (growing)171 ± 54 of 4 1.38Up
Whole fly124 ± 84 of 4

Looking for FBgn0035393. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime