Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035397 through 18771 annotations produced 1 hits



polyA-nuclease related (CG11486):

Annotation Number : CG11486
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035397
Gbrowse : chr3L:3071127-3088674 (+) // 100.0 //
Probeset : 1626332_s_at
Accessions : protein= NP_001097486; /// NP_001097487; /// NP_001097488; /// NP_647767; /// NP_728797; /// NP_728798; /// NP_728799; /// NP_728800; /// NP_728801; /// NP_728802; /// NP_728804; /// NP_728805; /// NP_728806; /// NP_995982; /// NP_995983;, nucleotide= NM_001104016; /// NM_001104017; /// NM_001104018; /// NM_139510; /// NM_167975; /// NM_167976; /// NM_167977; /// NM_167978; /// NM_167979; /// NM_167980; /// NM_167982; /// NM_167983; /// NM_167984; /// NM_206260; /// NM_206261;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0035397.
BDGP gene expression has embryonic in situ data for CG11486: 6 pix of staining in 1 body parts.
BioGrid reports that CG11486 interacts with CG14641 CG6337 CG8023 CG8232 CG8322 CG8924 CG11498 CG12548 CG1307 CG13090 CG14226 CG1467 CG1478 CG15124 CG15218 CG1871 CG2678 CG30503 CG3187 CG3225 CG33152 CG3510 CG3629 CG3668 CG3981 CG4303 CG5016 CG5461 CG7111 CG7386 CG7392 CG7600 CG7824 CG7849 CG9426 CG9986 Dmel CR31696 .
TRiP has 1 RNAi stocks for FBgn0035397 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain397 94 of 4 1.60Up
Head173 64 of 4 0.70Down
Eye415 134 of 4 1.66Up
Thoracicoabdominal ganglion419 124 of 4 1.70Up
Salivary gland634 164 of 4 2.54Up
Crop340 84 of 4 1.40Up
Midgut393 104 of 4 1.60Up
Tubule472 334 of 4 1.90Up
Hindgut255 34 of 4 1.00None
Heart742 204 of 4 2.97Up
Fat body173 354 of 4 0.69Down
Ovary382 34 of 4 1.50Up
Testis108 64 of 4 0.40Down
Male accessory glands119 94 of 4 0.50Down
Virgin spermatheca601 324 of 4 2.40Up
Mated spermatheca688 344 of 4 2.75Up
Adult carcass244 44 of 4 1.00None
Larval CNS309 124 of 4 1.23Up
Larval Salivary gland291 104 of 4 1.16None
Larval midgut452 324 of 4 1.81Up
Larval tubule205 84 of 4 0.80None
Larval hindgut463 354 of 4 1.85Up
Larval fat body225 104 of 4 0.90None
Larval trachea1016 1434 of 4 4.06Up
Larval carcass453 524 of 4 1.81Up
S2 cells (growing)132 54 of 4 0.53Down
Whole fly250 154 of 4

Looking for FBgn0035397. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime