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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035400 through 18771 annotations produced 1 hits



(CG11537):

Annotation Number : CG11537
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035400
Gbrowse : chr3L:3128831-3143454 (-) // 100.0 //
Probeset : 1641635_s_at
Accessions : protein= NP_001097489; /// NP_001097490; /// NP_647771; /// NP_728811; /// NP_728812;, nucleotide= NM_001104019; /// NM_001104020; /// NM_139514; /// NM_167988; /// NM_167989;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015144 // carbohydrate transmembrane transpo
FlyMine data for FBgn0035400.
BDGP gene expression has embryonic in situ data for CG11537: 15 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0035400 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain398 ± 104 of 4 3.50Up
Head137 ± 144 of 4 1.20None
Eye203 ± 214 of 4 1.79Up
Thoracicoabdominal ganglion302 ± 254 of 4 2.70Up
Salivary gland547 ± 94 of 4 4.82Up
Crop94 ± 54 of 4 0.80Down
Midgut172 ± 84 of 4 1.50Up
Tubule310 ± 194 of 4 2.70Up
Hindgut212 ± 34 of 4 1.90Up
Heart85 ± 74 of 4 0.75Down
Fat body79 ± 84 of 4 0.70Down
Ovary150 ± 24 of 4 1.30Up
Testis59 ± 14 of 4 0.50Down
Male accessory glands178 ± 24 of 4 1.60Up
Virgin spermatheca113 ± 54 of 4 1.00None
Mated spermatheca136 ± 84 of 4 1.20None
Adult carcass88 ± 14 of 4 0.80Down
Larval CNS136 ± 84 of 4 1.20Up
Larval Salivary gland404 ± 194 of 4 3.56Up
Larval midgut214 ± 164 of 4 1.89Up
Larval tubule1139 ± 194 of 410.00Up
Larval hindgut431 ± 94 of 4 3.80Up
Larval fat body62 ± 54 of 4 0.50Down
Larval trachea135 ± 184 of 4 1.19None
Larval carcass196 ± 94 of 4 1.73Up
S2 cells (growing)366 ± 114 of 4 3.22Up
Whole fly113 ± 54 of 4

Looking for FBgn0035400. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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