FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035410 through 18771 annotations produced 1 hits

(CG14964):

Annotation Number : CG14964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035410
Gbrowse : chr3L:3173262-3177906 (-) // 100.0 //
Probeset : 1635043_at
Accessions : protein= NP_647779;, nucleotide= NM_139522;
Interpro : 0017022 // myosin binding // inferred from sequence or structural similarity
FlyMine data for FBgn0035410.
Homophila reports that CG14964 is a close match (5e-11) to human gene DCC (NP_005206), a gene associated with Colorectal cancer (3).
VDRC has 1 RNAi stocks for FBgn0035410 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.10	Down
Head	5 ± 1	0 of 4	0.70	None
Eye	2 ± 0	0 of 4	0.27	Down
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.10	Down
Salivary gland	5 ± 1	0 of 4	0.69	None
Crop	23 ± 0	4 of 4	2.90	Up
Midgut	1 ± 0	0 of 4	0.20	Down
Tubule	0 ± 0	0 of 4	0.10	Down
Hindgut	9 ± 0	0 of 4	1.20	None
Heart	11 ± 2	3 of 4	1.39	None
Fat body	1 ± 0	0 of 4	0.21	Down
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	1 ± 0	0 of 4	0.10	Down
Male accessory glands	6 ± 3	0 of 4	0.80	None
Virgin spermatheca	0 ± 0	0 of 4	0.10	Down
Mated spermatheca	2 ± 0	0 of 4	0.26	Down
Adult carcass	40 ± 5	4 of 4	5.20	Up
Larval CNS	0 ± 0	0 of 4	0.09	Down
Larval Salivary gland	1 ± 0	0 of 4	0.13	Down
Larval midgut	2 ± 0	0 of 4	0.32	Down
Larval tubule	0 ± 0	0 of 4	0.10	Down
Larval hindgut	14 ± 1	2 of 4	1.79	Up
Larval fat body	1 ± 0	0 of 4	0.10	Down
Larval trachea	1 ± 1	0 of 4	0.23	Down
Larval carcass	71 ± 9	4 of 4	9.03	Up
S2 cells (growing)	2 ± 0	0 of 4	0.27	Down
Whole fly	7 ± 1	0 of 4

Looking for FBgn0035410. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720