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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035410 through 18771 annotations produced 1 hits



(CG14964):

Annotation Number : CG14964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035410
Gbrowse : chr3L:3173262-3177906 (-) // 100.0 //
Probeset : 1635043_at
Accessions : protein= NP_647779;, nucleotide= NM_139522;
Interpro : 0017022 // myosin binding // inferred from sequence or structural similarity
FlyMine data for FBgn0035410.
Homophila reports that CG14964 is a close match (5e-11) to human gene DCC (NP_005206), a gene associated with Colorectal cancer (3).
VDRC has 1 RNAi stocks for FBgn0035410 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head5 10 of 4 0.70None
Eye2 00 of 4 0.27Down
Thoracicoabdominal ganglion0 00 of 4 0.10Down
Salivary gland5 10 of 4 0.69None
Crop23 04 of 4 2.90Up
Midgut1 00 of 4 0.20Down
Tubule0 00 of 4 0.10Down
Hindgut9 00 of 4 1.20None
Heart11 23 of 4 1.39None
Fat body1 00 of 4 0.21Down
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands6 30 of 4 0.80None
Virgin spermatheca0 00 of 4 0.10Down
Mated spermatheca2 00 of 4 0.26Down
Adult carcass40 54 of 4 5.20Up
Larval CNS0 00 of 4 0.09Down
Larval Salivary gland1 00 of 4 0.13Down
Larval midgut2 00 of 4 0.32Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut14 12 of 4 1.79Up
Larval fat body1 00 of 4 0.10Down
Larval trachea1 10 of 4 0.23Down
Larval carcass71 94 of 4 9.03Up
S2 cells (growing)2 00 of 4 0.27Down
Whole fly7 10 of 4

Looking for FBgn0035410. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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