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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035412 through 18771 annotations produced 1 hits



(CG14957):

Annotation Number : CG14957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035412
Gbrowse : chr3L:3187578-3187990 (+) // 100.0 //
Probeset : 1629738_at
Accessions : protein= NP_647781;, nucleotide= NM_139524;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0035412.
BioGrid reports that CG14957 interacts with CG9007 .
VDRC has 3 RNAi stocks for FBgn0035412 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00None
Head2 00 of 4 0.00None
Eye1 00 of 4 0.03None
Thoracicoabdominal ganglion3 10 of 4 0.00None
Salivary gland2 10 of 4 0.05None
Crop2 11 of 4 0.00None
Midgut2 00 of 4 0.00None
Tubule1989 8844 of 432.80Up
Hindgut6 21 of 4 0.10None
Heart3 10 of 4 0.05None
Fat body15 261 of 4 0.25None
Ovary2 00 of 4 0.00None
Testis1 00 of 4 0.00None
Male accessory glands2 10 of 4 0.00None
Virgin spermatheca2 10 of 4 0.04None
Mated spermatheca2 11 of 4 0.03None
Adult carcass3 10 of 4 0.10None
Larval CNS2 20 of 4 0.05None
Larval Salivary gland4 10 of 4 0.07None
Larval midgut14 33 of 4 0.24None
Larval tubule5569 314 of 491.90Up
Larval hindgut31 84 of 4 0.51None
Larval fat body430 894 of 4 7.10Up
Larval trachea1 00 of 4 0.02None
Larval carcass7 13 of 4 0.13None
S2 cells (growing)3 00 of 4 0.06None
Whole fly60 354 of 4

Looking for FBgn0035412. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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