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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035413 through 18771 annotations produced 1 hits



(CG14958):

Annotation Number : CG14958
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035413
Gbrowse : chr3L:3189993-3190536 (+) // 100.0 //
Probeset : 1626298_at
Accessions : protein= NP_647782;, nucleotide= NM_139525;
FlyMine data for FBgn0035413.
VDRC has 4 RNAi stocks for FBgn0035413 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.50None
Head7 ± 20 of 4 0.90None
Eye4 ± 00 of 4 0.47None
Thoracicoabdominal ganglion4 ± 10 of 4 0.50None
Salivary gland15 ± 20 of 4 1.79None
Crop10 ± 20 of 4 1.20None
Midgut18 ± 50 of 4 2.10None
Tubule27 ± 91 of 4 3.20None
Hindgut29 ± 43 of 4 3.50Up
Heart3 ± 10 of 4 0.46None
Fat body16 ± 70 of 4 1.98None
Ovary6 ± 10 of 4 0.80None
Testis34 ± 44 of 4 4.00Up
Male accessory glands7 ± 20 of 4 0.90None
Virgin spermatheca5 ± 10 of 4 0.59None
Mated spermatheca5 ± 10 of 4 0.67None
Adult carcass9 ± 30 of 4 1.10None
Larval CNS3 ± 10 of 4 0.39None
Larval Salivary gland8 ± 20 of 4 0.98None
Larval midgut18 ± 20 of 4 2.10Up
Larval tubule218 ± 334 of 425.50Up
Larval hindgut185 ± 124 of 421.71Up
Larval fat body12 ± 30 of 4 1.50None
Larval trachea4 ± 30 of 4 0.48None
Larval carcass9 ± 20 of 4 1.11None
S2 cells (growing)9 ± 20 of 4 1.12None
Whole fly8 ± 20 of 4

Looking for FBgn0035413. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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