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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035414 through 18771 annotations produced 1 hits



(CG14965):

Annotation Number : CG14965
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035414
Gbrowse : chr3L:3190620-3192468 (-) // 100.0 //
Probeset : 1630731_at
Accessions : protein= NP_647783;, nucleotide= NM_139526;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0035414.
BDGP gene expression has embryonic in situ data for CG14965: 4 pix of staining in 1 body parts.
BioGrid reports that CG14965 interacts with CG3052 CG9072 CG17153 CG3035 CG7967 .
VDRC has 2 RNAi stocks for FBgn0035414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 14 of 4 0.40Down
Head5 ± 11 of 4 0.20Down
Eye8 ± 13 of 4 0.32Down
Thoracicoabdominal ganglion7 ± 13 of 4 0.30Down
Salivary gland6 ± 21 of 4 0.23Down
Crop4 ± 10 of 4 0.20Down
Midgut7 ± 10 of 4 0.30Down
Tubule3 ± 00 of 4 0.10Down
Hindgut4 ± 11 of 4 0.20Down
Heart3 ± 01 of 4 0.13Down
Fat body4 ± 20 of 4 0.16Down
Ovary100 ± 24 of 4 3.80Up
Testis17 ± 24 of 4 0.70None
Male accessory glands7 ± 22 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.15Down
Mated spermatheca6 ± 10 of 4 0.24Down
Adult carcass8 ± 10 of 4 0.30Down
Larval CNS43 ± 34 of 4 1.66Up
Larval Salivary gland3 ± 10 of 4 0.12Down
Larval midgut6 ± 02 of 4 0.23Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut4 ± 11 of 4 0.17Down
Larval fat body7 ± 21 of 4 0.30Down
Larval trachea12 ± 14 of 4 0.48Down
Larval carcass7 ± 01 of 4 0.28Down
S2 cells (growing)19 ± 14 of 4 0.72None
Whole fly26 ± 24 of 4

Looking for FBgn0035414. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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