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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035415 through 18771 annotations produced 1 hits



(CG14966):

Annotation Number : CG14966
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035415
Gbrowse : chr3L:3197097-3197520 (-) // 100.0 //
Probeset : 1627405_at
Accessions : protein= NP_647784;, nucleotide= NM_139527;
FlyMine data for FBgn0035415.
TRiP has 1 RNAi stocks for FBgn0035415 available for purchase.
VDRC has 4 RNAi stocks for FBgn0035415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 24 of 4 0.40Down
Head86 54 of 4 0.80Down
Eye88 34 of 4 0.83Down
Thoracicoabdominal ganglion55 24 of 4 0.50Down
Salivary gland99 54 of 4 0.93None
Crop103 54 of 4 1.00None
Midgut117 44 of 4 1.10None
Tubule135 54 of 4 1.30Up
Hindgut118 34 of 4 1.10None
Heart130 44 of 4 1.22Up
Fat body111 84 of 4 1.04None
Ovary173 34 of 4 1.60Up
Testis102 54 of 4 0.90None
Male accessory glands81 34 of 4 0.80Down
Virgin spermatheca113 44 of 4 1.06None
Mated spermatheca92 54 of 4 0.86None
Adult carcass93 54 of 4 0.90None
Larval CNS214 104 of 4 1.99Up
Larval Salivary gland201 124 of 4 1.87Up
Larval midgut108 64 of 4 1.01None
Larval tubule275 54 of 4 2.60Up
Larval hindgut159 54 of 4 1.48Up
Larval fat body252 334 of 4 2.30Up
Larval trachea196 214 of 4 1.83Up
Larval carcass288 84 of 4 2.69Up
S2 cells (growing)136 14 of 4 1.27Up
Whole fly107 54 of 4

Looking for FBgn0035415. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime