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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035416 through 18771 annotations produced 1 hits



gryzun (gry):

Annotation Number : CG17569
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035416
Gbrowse : chr3L:3199020-3211347 (+) // 100.0 //
Probeset : 1625888_a_at
Accessions : protein= NP_647785; /// NP_728832;, nucleotide= NM_139528; /// NM_168000;
FlyMine data for FBgn0035416.
VDRC has 2 RNAi stocks for FBgn0035416 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain139 ± 14 of 4 1.00None
Head123 ± 34 of 4 0.80Down
Eye76 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion172 ± 54 of 4 1.20Up
Salivary gland267 ± 224 of 4 1.83Up
Crop171 ± 34 of 4 1.20Up
Midgut152 ± 34 of 4 1.00None
Tubule167 ± 54 of 4 1.20Up
Hindgut149 ± 24 of 4 1.00None
Heart113 ± 84 of 4 0.78Down
Fat body124 ± 64 of 4 0.85Down
Ovary260 ± 114 of 4 1.80Up
Testis63 ± 34 of 4 0.40Down
Male accessory glands157 ± 54 of 4 1.10None
Virgin spermatheca230 ± 44 of 4 1.58Up
Mated spermatheca263 ± 194 of 4 1.81Up
Adult carcass123 ± 74 of 4 0.80Down
Larval CNS137 ± 24 of 4 0.94None
Larval Salivary gland227 ± 134 of 4 1.56Up
Larval midgut149 ± 54 of 4 1.02None
Larval tubule154 ± 64 of 4 1.10None
Larval hindgut212 ± 34 of 4 1.46Up
Larval fat body117 ± 94 of 4 0.80Down
Larval trachea205 ± 94 of 4 1.41Up
Larval carcass154 ± 54 of 4 1.06None
S2 cells (growing)236 ± 44 of 4 1.62Up
Whole fly146 ± 44 of 4

Looking for FBgn0035416. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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