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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035420 through 18771 annotations produced 1 hits



(CG14967):

Annotation Number : CG14967
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035420
Gbrowse : chr3L:3211109-3218804 (-) // 100.0 //
Probeset : 1641403_at
Accessions : protein= NP_647789;, nucleotide= NM_139532;
FlyMine data for FBgn0035420.
VDRC has 2 RNAi stocks for FBgn0035420 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain235 ± 44 of 4 1.00None
Head174 ± 94 of 4 0.80None
Eye237 ± 224 of 4 1.03None
Thoracicoabdominal ganglion263 ± 64 of 4 1.10None
Salivary gland206 ± 114 of 4 0.89None
Crop252 ± 94 of 4 1.10None
Midgut184 ± 44 of 4 0.80None
Tubule274 ± 174 of 4 1.20Up
Hindgut192 ± 74 of 4 0.80None
Heart201 ± 74 of 4 0.87None
Fat body173 ± 124 of 4 0.75None
Ovary510 ± 174 of 4 2.20Up
Testis458 ± 154 of 4 2.00Up
Male accessory glands202 ± 84 of 4 0.90None
Virgin spermatheca273 ± 224 of 4 1.18None
Mated spermatheca317 ± 294 of 4 1.37None
Adult carcass149 ± 64 of 4 0.60Down
Larval CNS331 ± 244 of 4 1.43Up
Larval Salivary gland249 ± 104 of 4 1.08None
Larval midgut326 ± 114 of 4 1.41Up
Larval tubule309 ± 74 of 4 1.30Up
Larval hindgut268 ± 114 of 4 1.16None
Larval fat body301 ± 74 of 4 1.30Up
Larval trachea200 ± 334 of 4 0.87None
Larval carcass186 ± 14 of 4 0.81None
S2 cells (growing)391 ± 114 of 4 1.69Up
Whole fly231 ± 224 of 4

Looking for FBgn0035420. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime