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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035422 through 18771 annotations produced 2 hits



Ribosomal protein L28 (RpL28):

Annotation Number : CG12740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035422
Gbrowse : chr3L:3220909-3222958 (-) // 100.0 //
Probeset : 1633905_at
Accessions : protein= NP_001163336; /// NP_001163337; /// NP_647791; /// NP_728839; /// NP_728840; /// NP_728841;, nucleotide= NM_001169865; /// NM_001169866; /// NM_139534; /// NM_168004; /// NM_168005; /// NM_168006;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0035422.
BioGrid reports that CG12740 interacts with CG5061 CG3335 CG9610 .
TRiP has 1 RNAi stocks for FBgn0035422 available for purchase.
VDRC has 5 RNAi stocks for FBgn0035422 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 ± 34 of 4 1.70Up
Head22 ± 24 of 4 0.70None
Eye30 ± 84 of 4 0.94None
Thoracicoabdominal ganglion43 ± 24 of 4 1.40None
Salivary gland29 ± 23 of 4 0.91None
Crop25 ± 14 of 4 0.80None
Midgut26 ± 44 of 4 0.80None
Tubule23 ± 24 of 4 0.70Down
Hindgut17 ± 14 of 4 0.50None
Heart24 ± 24 of 4 0.76None
Fat body33 ± 34 of 4 1.04None
Ovary52 ± 14 of 4 1.60Up
Testis3 ± 10 of 4 0.10Down
Male accessory glands66 ± 54 of 4 2.10Up
Virgin spermatheca30 ± 44 of 4 0.96None
Mated spermatheca31 ± 44 of 4 0.99None
Adult carcass18 ± 33 of 4 0.60None
Larval CNS57 ± 104 of 4 1.79Up
Larval Salivary gland39 ± 64 of 4 1.22None
Larval midgut8 ± 13 of 4 0.27Down
Larval tubule10 ± 13 of 4 0.30Down
Larval hindgut11 ± 14 of 4 0.35Down
Larval fat body23 ± 24 of 4 0.70None
Larval trachea68 ± 144 of 4 2.13Up
Larval carcass24 ± 74 of 4 0.77None
S2 cells (growing)17 ± 24 of 4 0.54None
Whole fly32 ± 54 of 4



Ribosomal protein L28 (RpL28):

Annotation Number : CG12740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035422
Gbrowse : chr3L:3220909-3222958 (-) // 100.0 //
Probeset : 1625991_s_at
Accessions : protein= NP_001163336; /// NP_001163337; /// NP_647791; /// NP_728839; /// NP_728840; /// NP_728841;, nucleotide= NM_001169865; /// NM_001169866; /// NM_139534; /// NM_168004; /// NM_168005; /// NM_168006;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0035422.
BioGrid reports that CG12740 interacts with CG5061 CG3335 CG9610 .
TRiP has 1 RNAi stocks for FBgn0035422 available for purchase.
VDRC has 5 RNAi stocks for FBgn0035422 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2738 ± 294 of 4 0.80Down
Head3922 ± 1204 of 4 1.20Up
Eye6010 ± 994 of 4 1.81Up
Thoracicoabdominal ganglion3727 ± 1014 of 4 1.10None
Salivary gland8836 ± 1574 of 4 2.66Up
Crop5634 ± 2884 of 4 1.70Up
Midgut4870 ± 1404 of 4 1.50Up
Tubule1926 ± 324 of 4 0.60Down
Hindgut4467 ± 1064 of 4 1.30Up
Heart5888 ± 3264 of 4 1.77Up
Fat body4669 ± 6904 of 4 1.41Up
Ovary2745 ± 384 of 4 0.80Down
Testis699 ± 714 of 4 0.20Down
Male accessory glands7975 ± 1964 of 4 2.40Up
Virgin spermatheca2253 ± 1064 of 4 0.68Down
Mated spermatheca2221 ± 1344 of 4 0.67Down
Adult carcass5169 ± 1374 of 4 1.60Up
Larval CNS2202 ± 2464 of 4 0.66Down
Larval Salivary gland7522 ± 4374 of 4 2.27Up
Larval midgut4253 ± 484 of 4 1.28Up
Larval tubule4751 ± 1184 of 4 1.40Up
Larval hindgut3699 ± 554 of 4 1.11None
Larval fat body7398 ± 8344 of 4 2.20Up
Larval trachea5690 ± 2184 of 4 1.71Up
Larval carcass4247 ± 3324 of 4 1.28None
S2 cells (growing)4220 ± 1574 of 4 1.27Up
Whole fly3318 ± 1554 of 4

Looking for FBgn0035422. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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