FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035423 through 18771 annotations produced 1 hits

(CG17737):

Annotation Number : CG17737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035423
Gbrowse : chr3L:3223349-3224704 (+) // 100.0 //
Probeset : 1636206_at
Accessions : protein= NP_647792;, nucleotide= NM_139535;
Interpro : 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding
FlyMine data for FBgn0035423.
BDGP gene expression has embryonic in situ data for CG17737: 4 pix of staining in 1 body parts.
BioGrid reports that CG17737 interacts with CG4954 CG2848 CG4697 CG6467 .
VDRC has 3 RNAi stocks for FBgn0035423 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1412 ± 41	4 of 4	0.90	None
Head	1901 ± 89	4 of 4	1.20	None
Eye	3576 ± 302	4 of 4	2.19	Up
Thoracicoabdominal ganglion	1379 ± 31	4 of 4	0.80	Down
Salivary gland	2513 ± 68	4 of 4	1.54	Up
Crop	2059 ± 72	4 of 4	1.30	Up
Midgut	1469 ± 34	4 of 4	0.90	None
Tubule	1499 ± 21	4 of 4	0.90	Down
Hindgut	1834 ± 19	4 of 4	1.10	Up
Heart	1820 ± 72	4 of 4	1.12	None
Fat body	1576 ± 41	4 of 4	0.97	None
Ovary	1985 ± 64	4 of 4	1.20	Up
Testis	1692 ± 48	4 of 4	1.00	None
Male accessory glands	2825 ± 71	4 of 4	1.70	Up
Virgin spermatheca	2536 ± 67	4 of 4	1.56	Up
Mated spermatheca	2656 ± 62	4 of 4	1.63	Up
Adult carcass	1404 ± 117	4 of 4	0.90	None
Larval CNS	1814 ± 70	4 of 4	1.11	Up
Larval Salivary gland	2437 ± 71	4 of 4	1.50	Up
Larval midgut	1139 ± 30	4 of 4	0.70	Down
Larval tubule	2629 ± 41	4 of 4	1.60	Up
Larval hindgut	1673 ± 47	4 of 4	1.03	None
Larval fat body	3914 ± 328	4 of 4	2.40	Up
Larval trachea	2767 ± 161	4 of 4	1.70	Up
Larval carcass	1964 ± 110	4 of 4	1.21	Up
S2 cells (growing)	3159 ± 32	4 of 4	1.94	Up
Whole fly	1630 ± 58	4 of 4

Looking for FBgn0035423. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720