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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035425 through 18771 annotations produced 1 hits



(CG17746):

Annotation Number : CG17746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035425
Gbrowse : chr3L:3236941-3239520 (-) // 100.0 //
Probeset : 1631724_s_at
Accessions : protein= NP_647794; /// NP_728844;, nucleotide= NM_139537; /// NM_168008;
Pathway : 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity
FlyMine data for FBgn0035425.
BDGP gene expression has embryonic in situ data for CG17746: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0035425 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035425 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 ± 54 of 4 0.80Down
Head125 ± 64 of 4 0.50Down
Eye142 ± 64 of 4 0.53Down
Thoracicoabdominal ganglion221 ± 54 of 4 0.80Down
Salivary gland170 ± 104 of 4 0.63Down
Crop218 ± 44 of 4 0.80Down
Midgut304 ± 84 of 4 1.10None
Tubule737 ± 314 of 4 2.70Up
Hindgut237 ± 64 of 4 0.90None
Heart120 ± 54 of 4 0.45Down
Fat body105 ± 184 of 4 0.39Down
Ovary459 ± 154 of 4 1.70Up
Testis286 ± 104 of 4 1.10None
Male accessory glands114 ± 54 of 4 0.40Down
Virgin spermatheca95 ± 84 of 4 0.35Down
Mated spermatheca127 ± 164 of 4 0.47Down
Adult carcass104 ± 44 of 4 0.40Down
Larval CNS249 ± 114 of 4 0.92None
Larval Salivary gland238 ± 74 of 4 0.88None
Larval midgut333 ± 204 of 4 1.24Up
Larval tubule659 ± 274 of 4 2.40Up
Larval hindgut213 ± 104 of 4 0.79Down
Larval fat body241 ± 84 of 4 0.90None
Larval trachea314 ± 114 of 4 1.16Up
Larval carcass309 ± 534 of 4 1.14None
S2 cells (growing)826 ± 184 of 4 3.06Up
Whole fly270 ± 114 of 4

Looking for FBgn0035425. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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