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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035426 through 18771 annotations produced 1 hits


(CG12078):

Annotation Number : CG12078
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035426
Gbrowse : chr3L:3243349-3244060 (-) // 100.0 //
Probeset : 1633860_at
Accessions : protein= NP_647795;, nucleotide= NM_139538;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred fro
FlyMine data for FBgn0035426.
VDRC has 3 RNAi stocks for FBgn0035426 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 12 of 4 0.20Down
Head2 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.20Down
Salivary gland4 ± 10 of 4 0.13Down
Crop4 ± 20 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart3 ± 21 of 4 0.11Down
Fat body0 ± 00 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis526 ± 174 of 415.90Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.08Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass5 ± 10 of 4 0.10Down
Larval CNS4 ± 00 of 4 0.14Down
Larval Salivary gland3 ± 00 of 4 0.09Down
Larval midgut2 ± 10 of 4 0.09Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut2 ± 11 of 4 0.07Down
Larval fat body71 ± 452 of 4 2.20None
Larval trachea3 ± 31 of 4 0.11Down
Larval carcass5 ± 10 of 4 0.15Down
S2 cells (growing)2 ± 10 of 4 0.08Down
Whole fly33 ± 24 of 4

Looking for FBgn0035426. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime