Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035427 through 18771 annotations produced 2 hits



cracked (ckd):

Annotation Number : CG14959
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035427
Gbrowse : chr3L:3258154-3267752 (+) // 99.67 //
Probeset : 1641389_at
Accessions : protein= NP_995986;, nucleotide= NM_206264;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035427.
BioGrid reports that CG14959 interacts with CG3978 CG3978 .
VDRC has 2 RNAi stocks for FBgn0035427 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.10Down
Head23 24 of 4 1.00None
Eye20 34 of 4 0.92None
Thoracicoabdominal ganglion13 04 of 4 0.60Down
Salivary gland13 20 of 4 0.59Down
Crop19 13 of 4 0.90None
Midgut3 00 of 4 0.10Down
Tubule6 10 of 4 0.30Down
Hindgut20 14 of 4 0.90None
Heart4 11 of 4 0.21Down
Fat body16 63 of 4 0.74None
Ovary13 14 of 4 0.60Down
Testis6 03 of 4 0.30Down
Male accessory glands6 20 of 4 0.30Down
Virgin spermatheca48 24 of 4 2.13Up
Mated spermatheca69 64 of 4 3.08Up
Adult carcass19 12 of 4 0.80None
Larval CNS13 34 of 4 0.59Down
Larval Salivary gland15 33 of 4 0.69None
Larval midgut10 22 of 4 0.45Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut257 204 of 411.42Up
Larval fat body7 10 of 4 0.30Down
Larval trachea529 764 of 423.45Up
Larval carcass2746 1554 of 4121.67Up
S2 cells (growing)2 00 of 4 0.11Down
Whole fly22 24 of 4



cracked (ckd):

Annotation Number : CG14959
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035427
Gbrowse : chr3L:3258154-3267752 (+) // 99.63 //
Probeset : 1625326_a_at
Accessions : protein= NP_995986;, nucleotide= NM_206264;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035427.
BioGrid reports that CG14959 interacts with CG3978 CG3978 .
VDRC has 2 RNAi stocks for FBgn0035427 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head19 24 of 4 0.90None
Eye15 04 of 4 0.77None
Thoracicoabdominal ganglion13 14 of 4 0.70Down
Salivary gland7 20 of 4 0.38Down
Crop15 14 of 4 0.70None
Midgut3 10 of 4 0.20Down
Tubule7 00 of 4 0.30Down
Hindgut17 14 of 4 0.80None
Heart5 11 of 4 0.24Down
Fat body14 43 of 4 0.70None
Ovary15 04 of 4 0.80None
Testis8 11 of 4 0.40Down
Male accessory glands10 20 of 4 0.50Down
Virgin spermatheca40 24 of 4 1.95Up
Mated spermatheca43 24 of 4 2.09Up
Adult carcass17 31 of 4 0.90None
Larval CNS7 13 of 4 0.37Down
Larval Salivary gland11 10 of 4 0.57Down
Larval midgut11 24 of 4 0.57Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut140 134 of 4 6.79Up
Larval fat body6 10 of 4 0.30Down
Larval trachea260 324 of 412.64Up
Larval carcass1859 934 of 490.03Up
S2 cells (growing)3 10 of 4 0.15Down
Whole fly20 14 of 4

Looking for FBgn0035427. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime