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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035429 through 18771 annotations produced 1 hits



(CG12017):

Annotation Number : CG12017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035429
Gbrowse : chr3L:3280246-3290893 (+) // 100.0 //
Probeset : 1634017_at
Accessions : protein= NP_647798;, nucleotide= NM_139541;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035429.
BDGP gene expression has embryonic in situ data for CG12017: 10 pix of staining in 4 body parts.
BioGrid reports that CG12017 interacts with CG31243 .
VDRC has 3 RNAi stocks for FBgn0035429 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.50None
Head6 ± 02 of 4 0.80None
Eye2 ± 00 of 4 0.27None
Thoracicoabdominal ganglion4 ± 10 of 4 0.50None
Salivary gland7 ± 20 of 4 0.92None
Crop9 ± 10 of 4 1.10None
Midgut13 ± 11 of 4 1.50None
Tubule5 ± 00 of 4 0.60Down
Hindgut4 ± 20 of 4 0.50None
Heart4 ± 11 of 4 0.55None
Fat body6 ± 30 of 4 0.74None
Ovary3 ± 10 of 4 0.40None
Testis5 ± 01 of 4 0.60None
Male accessory glands8 ± 20 of 4 1.00None
Virgin spermatheca2 ± 10 of 4 0.31None
Mated spermatheca2 ± 10 of 4 0.32None
Adult carcass6 ± 10 of 4 0.70None
Larval CNS2 ± 10 of 4 0.29None
Larval Salivary gland7 ± 11 of 4 0.83None
Larval midgut10 ± 04 of 4 1.16None
Larval tubule5 ± 10 of 4 0.70None
Larval hindgut28 ± 54 of 4 3.33Up
Larval fat body7 ± 21 of 4 0.80None
Larval trachea24 ± 54 of 4 2.83Up
Larval carcass7 ± 11 of 4 0.90None
S2 cells (growing)4 ± 00 of 4 0.57None
Whole fly8 ± 23 of 4

Looking for FBgn0035429. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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