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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035430 through 18771 annotations produced 1 hits



(CG12009):

Annotation Number : CG12009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035430
Gbrowse : chr3L:3294751-3298956 (+) // 99.78 //
Probeset : 1634768_at
Accessions : protein= NP_647799;, nucleotide= NM_139542;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035430.
BDGP gene expression has embryonic in situ data for CG12009: 21 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0035430 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.40None
Head6 ± 11 of 4 0.40None
Eye3 ± 10 of 4 0.27None
Thoracicoabdominal ganglion7 ± 00 of 4 0.50None
Salivary gland19 ± 40 of 4 1.33None
Crop14 ± 20 of 4 1.00None
Midgut5 ± 20 of 4 0.30None
Tubule5 ± 00 of 4 0.40Down
Hindgut5 ± 10 of 4 0.40None
Heart5 ± 10 of 4 0.39None
Fat body13 ± 34 of 4 0.90None
Ovary5 ± 10 of 4 0.40None
Testis14 ± 20 of 4 1.00None
Male accessory glands4 ± 10 of 4 0.30None
Virgin spermatheca10 ± 11 of 4 0.74None
Mated spermatheca12 ± 23 of 4 0.83None
Adult carcass5 ± 10 of 4 0.40None
Larval CNS9 ± 12 of 4 0.63None
Larval Salivary gland3 ± 00 of 4 0.22None
Larval midgut6 ± 20 of 4 0.44None
Larval tubule4 ± 10 of 4 0.30None
Larval hindgut5 ± 20 of 4 0.36None
Larval fat body12 ± 30 of 4 0.80None
Larval trachea448 ± 904 of 430.53Up
Larval carcass22 ± 50 of 4 1.53None
S2 cells (growing)1 ± 00 of 4 0.11None
Whole fly14 ± 53 of 4

Looking for FBgn0035430. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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