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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035431 through 18771 annotations produced 1 hits



(CG14968):

Annotation Number : CG14968
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035431
Gbrowse : chr3L:3299335-3303108 (-) // 100.0 //
Probeset : 1634145_s_at
Accessions : protein= NP_647800; /// NP_728852; /// NP_728853; /// NP_728854; /// NP_728855;, nucleotide= NM_139543; /// NM_168011; /// NM_168012; /// NM_168013; /// NM_168014;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035431.
BDGP gene expression has embryonic in situ data for CG14968: 53 pix of staining in 10 body parts.
VDRC has 3 RNAi stocks for FBgn0035431 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 24 of 4 0.20Down
Head31 24 of 4 0.30Down
Eye49 34 of 4 0.42Down
Thoracicoabdominal ganglion26 14 of 4 0.20Down
Salivary gland38 34 of 4 0.33Down
Crop5 10 of 4 0.00Down
Midgut942 104 of 4 8.10Up
Tubule722 474 of 4 6.20Up
Hindgut189 114 of 4 1.60Up
Heart4 10 of 4 0.04Down
Fat body11 71 of 4 0.10Down
Ovary9 04 of 4 0.10Down
Testis564 214 of 4 4.80Up
Male accessory glands18 33 of 4 0.20Down
Virgin spermatheca69 44 of 4 0.60Down
Mated spermatheca78 54 of 4 0.67Down
Adult carcass21 32 of 4 0.20Down
Larval CNS60 194 of 4 0.52Down
Larval Salivary gland27 44 of 4 0.23Down
Larval midgut484 104 of 4 4.15Up
Larval tubule471 244 of 4 4.00Up
Larval hindgut158 84 of 4 1.36Up
Larval fat body64 294 of 4 0.60None
Larval trachea432 354 of 4 3.71Up
Larval carcass48 94 of 4 0.41Down
S2 cells (growing)8 04 of 4 0.07Down
Whole fly116 94 of 4

Looking for FBgn0035431. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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