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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035432 through 18771 annotations produced 1 hits



CG17723 (ZnT63C):

Annotation Number : CG17723
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035432
Gbrowse : chr3L:3303721-3313476 (+) // 99.8 //
Probeset : 1630996_s_at
Accessions : protein= NP_647801; /// NP_728856; /// NP_728857; /// NP_728858; /// NP_728859;, nucleotide= NM_139544; /// NM_168015; /// NM_168016; /// NM_168017; /// NM_168018;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation
Interpro : 0005385 // zinc ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0008324 //
FlyMine data for FBgn0035432.
BDGP gene expression has embryonic in situ data for CG17723: 38 pix of staining in 20 body parts.
Homophila reports that CG17723 is a close match (1e-18) to human gene SLC30A8;ZNT8 (NP_776250), a gene associated with {Diabetes mellitus, noninsulin-dependent, susceptibility to}, 125853 (3).
BioGrid reports that CG17723 interacts with CG5827 CG3071 .
VDRC has 3 RNAi stocks for FBgn0035432 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 ± 34 of 4 1.20None
Head127 ± 94 of 4 0.90None
Eye282 ± 134 of 4 2.03Up
Thoracicoabdominal ganglion121 ± 64 of 4 0.90None
Salivary gland134 ± 104 of 4 0.97None
Crop146 ± 74 of 4 1.00None
Midgut204 ± 84 of 4 1.50Up
Tubule664 ± 764 of 4 4.80Up
Hindgut181 ± 94 of 4 1.30Up
Heart286 ± 294 of 4 2.05Up
Fat body104 ± 74 of 4 0.75Down
Ovary170 ± 44 of 4 1.20Up
Testis161 ± 14 of 4 1.20None
Male accessory glands307 ± 44 of 4 2.20Up
Virgin spermatheca75 ± 14 of 4 0.54Down
Mated spermatheca96 ± 14 of 4 0.69Down
Adult carcass131 ± 64 of 4 0.90None
Larval CNS88 ± 34 of 4 0.63Down
Larval Salivary gland710 ± 494 of 4 5.10Up
Larval midgut129 ± 84 of 4 0.93None
Larval tubule804 ± 264 of 4 5.80Up
Larval hindgut141 ± 64 of 4 1.01None
Larval fat body79 ± 54 of 4 0.60Down
Larval trachea436 ± 734 of 4 3.13Up
Larval carcass113 ± 134 of 4 0.81None
S2 cells (growing)376 ± 114 of 4 2.70Up
Whole fly139 ± 84 of 4

Looking for FBgn0035432. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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