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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035435 through 18771 annotations produced 1 hits



(CG12077):

Annotation Number : CG12077
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035435
Gbrowse : chr3L:3318229-3319192 (-) // 100.0 //
Probeset : 1637783_at
Accessions : protein= NP_647804;, nucleotide= NM_139547;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0035435.
VDRC has 2 RNAi stocks for FBgn0035435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 21 of 4 0.30Down
Head11 ± 10 of 4 0.30Down
Eye10 ± 11 of 4 0.30Down
Thoracicoabdominal ganglion12 ± 11 of 4 0.30Down
Salivary gland11 ± 40 of 4 0.32Down
Crop9 ± 00 of 4 0.30Down
Midgut9 ± 30 of 4 0.20Down
Tubule14 ± 11 of 4 0.40Down
Hindgut9 ± 10 of 4 0.30Down
Heart15 ± 23 of 4 0.42Down
Fat body16 ± 20 of 4 0.45Down
Ovary72 ± 24 of 4 2.00Up
Testis27 ± 34 of 4 0.70None
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca20 ± 14 of 4 0.55Down
Mated spermatheca15 ± 22 of 4 0.42Down
Adult carcass13 ± 20 of 4 0.40Down
Larval CNS22 ± 44 of 4 0.62Down
Larval Salivary gland25 ± 43 of 4 0.69None
Larval midgut6 ± 10 of 4 0.18Down
Larval tubule24 ± 24 of 4 0.70Down
Larval hindgut15 ± 10 of 4 0.42Down
Larval fat body24 ± 24 of 4 0.70Down
Larval trachea16 ± 21 of 4 0.46Down
Larval carcass12 ± 20 of 4 0.34Down
S2 cells (growing)23 ± 34 of 4 0.64Down
Whole fly36 ± 04 of 4

Looking for FBgn0035435. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime