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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035439 through 18771 annotations produced 1 hits



(CG14961):

Annotation Number : CG14961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035439
Gbrowse : chr3L:3330141-3332942 (+) // 100.0 //
Probeset : 1624783_at
Accessions : protein= NP_647808;, nucleotide= NM_139551;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035439.
BioGrid reports that CG14961 interacts with CG15707 CG1768 CG15753 CG17050 CG18584 .
VDRC has 3 RNAi stocks for FBgn0035439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.00None
Head2 ± 00 of 4 0.70None
Eye2 ± 10 of 4 0.96None
Thoracicoabdominal ganglion0 ± 00 of 4 0.30None
Salivary gland6 ± 10 of 4 2.31None
Crop2 ± 10 of 4 0.90None
Midgut1 ± 00 of 4 0.40None
Tubule2 ± 00 of 4 0.80None
Hindgut0 ± 00 of 4 0.30None
Heart3 ± 10 of 4 1.13None
Fat body2 ± 10 of 4 0.98None
Ovary1 ± 00 of 4 0.70None
Testis1 ± 00 of 4 0.40None
Male accessory glands7 ± 20 of 4 2.60None
Virgin spermatheca5 ± 10 of 4 1.82None
Mated spermatheca2 ± 10 of 4 0.94None
Adult carcass1 ± 00 of 4 0.60None
Larval CNS0 ± 00 of 4 0.28None
Larval Salivary gland1 ± 00 of 4 0.61None
Larval midgut3 ± 10 of 4 1.18None
Larval tubule2 ± 10 of 4 0.70None
Larval hindgut0 ± 00 of 4 0.32None
Larval fat body14 ± 30 of 4 4.90Up
Larval trachea2 ± 10 of 4 0.94None
Larval carcass2 ± 00 of 4 0.80None
S2 cells (growing)3 ± 00 of 4 1.31None
Whole fly2 ± 10 of 4

Looking for FBgn0035439. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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