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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035440 through 18771 annotations produced 1 hits



(CG14969):

Annotation Number : CG14969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035440
Gbrowse : chr3L:3333111-3334978 (-) // 100.0 //
Probeset : 1633980_at
Accessions : protein= NP_647809;, nucleotide= NM_139552;
FlyMine data for FBgn0035440.
Homophila reports that CG14969 is a close match (1e-15) to human gene GL;OPTB5;OSTM1 (NP_054747), a gene associated with Osteopetrosis, autosomal recessive 5, 259720 (3).
VDRC has 1 RNAi stocks for FBgn0035440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain99 ± 44 of 4 1.10None
Head97 ± 24 of 4 1.10None
Eye100 ± 74 of 4 1.12None
Thoracicoabdominal ganglion97 ± 44 of 4 1.10None
Salivary gland156 ± 74 of 4 1.75Up
Crop123 ± 74 of 4 1.40Up
Midgut87 ± 14 of 4 1.00None
Tubule94 ± 24 of 4 1.10Up
Hindgut87 ± 44 of 4 1.00None
Heart139 ± 44 of 4 1.56Up
Fat body170 ± 194 of 4 1.90Up
Ovary153 ± 64 of 4 1.70Up
Testis69 ± 44 of 4 0.80Down
Male accessory glands184 ± 114 of 4 2.10Up
Virgin spermatheca111 ± 74 of 4 1.25None
Mated spermatheca138 ± 64 of 4 1.54Up
Adult carcass91 ± 44 of 4 1.00None
Larval CNS117 ± 84 of 4 1.32Up
Larval Salivary gland92 ± 54 of 4 1.03None
Larval midgut126 ± 104 of 4 1.41Up
Larval tubule160 ± 34 of 4 1.80Up
Larval hindgut108 ± 34 of 4 1.21Up
Larval fat body123 ± 84 of 4 1.40Up
Larval trachea120 ± 124 of 4 1.35Up
Larval carcass94 ± 44 of 4 1.05None
S2 cells (growing)267 ± 24 of 4 2.99Up
Whole fly89 ± 14 of 4

Looking for FBgn0035440. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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