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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035445 through 18771 annotations produced 1 hits



(CG12014):

Annotation Number : CG12014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035445
Gbrowse : chr3L:3378284-3380084 (+) // 100.0 //
Probeset : 1626955_at
Accessions : protein= NP_647814;, nucleotide= NM_139557;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004423 // iduronate-2-sulfatase activity // in
FlyMine data for FBgn0035445.
Homophila reports that CG12014 is a close match (6e-81) to human gene IDS;MPS2;SIDS (NP_006114), a gene associated with Mucopolysaccharidosis II (3).
VDRC has 2 RNAi stocks for FBgn0035445 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 04 of 4 6.40Up
Head50 ± 11 of 4 5.00Up
Eye66 ± 24 of 4 6.70Up
Thoracicoabdominal ganglion89 ± 94 of 4 8.90Up
Salivary gland19 ± 50 of 4 1.92None
Crop30 ± 30 of 4 3.10Up
Midgut12 ± 20 of 4 1.20None
Tubule9 ± 10 of 4 0.90None
Hindgut9 ± 20 of 4 1.00None
Heart31 ± 61 of 4 3.17Up
Fat body7 ± 50 of 4 0.70None
Ovary4 ± 10 of 4 0.40None
Testis5 ± 10 of 4 0.60None
Male accessory glands5 ± 00 of 4 0.50None
Virgin spermatheca6 ± 10 of 4 0.62None
Mated spermatheca4 ± 00 of 4 0.42None
Adult carcass12 ± 20 of 4 1.30None
Larval CNS65 ± 64 of 4 6.58Up
Larval Salivary gland4 ± 10 of 4 0.47None
Larval midgut7 ± 20 of 4 0.79None
Larval tubule4 ± 10 of 4 0.50None
Larval hindgut8 ± 10 of 4 0.86None
Larval fat body9 ± 40 of 4 1.00None
Larval trachea4 ± 30 of 4 0.46None
Larval carcass11 ± 30 of 4 1.18None
S2 cells (growing)734 ± 264 of 473.47Up
Whole fly10 ± 30 of 4

Looking for FBgn0035445. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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