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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035449 through 18771 annotations produced 1 hits



(CG14971):

Annotation Number : CG14971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035449
Gbrowse : chr3L:3468012-3471338 (-) // 100.0 //
Probeset : 1639341_at
Accessions : protein= NP_647817;, nucleotide= NM_139560;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0035449.
VDRC has 2 RNAi stocks for FBgn0035449 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain291 ± 54 of 4 1.70Up
Head155 ± 84 of 4 0.90None
Eye55 ± 34 of 4 0.31Down
Thoracicoabdominal ganglion372 ± 144 of 4 2.10Up
Salivary gland1813 ± 514 of 410.31Up
Crop197 ± 84 of 4 1.10None
Midgut466 ± 154 of 4 2.70Up
Tubule313 ± 44 of 4 1.80Up
Hindgut212 ± 74 of 4 1.20Up
Heart78 ± 84 of 4 0.44Down
Fat body270 ± 344 of 4 1.54Up
Ovary521 ± 34 of 4 3.00Up
Testis138 ± 34 of 4 0.80Down
Male accessory glands386 ± 114 of 4 2.20Up
Virgin spermatheca801 ± 424 of 4 4.56Up
Mated spermatheca791 ± 574 of 4 4.50Up
Adult carcass108 ± 104 of 4 0.60Down
Larval CNS201 ± 74 of 4 1.15Up
Larval Salivary gland1676 ± 894 of 4 9.53Up
Larval midgut1050 ± 504 of 4 5.97Up
Larval tubule1446 ± 874 of 4 8.20Up
Larval hindgut443 ± 264 of 4 2.52Up
Larval fat body389 ± 254 of 4 2.20Up
Larval trachea112 ± 364 of 4 0.64Down
Larval carcass220 ± 124 of 4 1.25Up
S2 cells (growing)263 ± 94 of 4 1.50Up
Whole fly175 ± 54 of 4

Looking for FBgn0035449. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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