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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035455 through 18771 annotations produced 1 hits


Annotation Number : CG10862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035455
Gbrowse : chr3L:3653464-3654771 (-) // 100.0 //
Probeset : 1623978_at
Accessions : protein= NP_647823;, nucleotide= NM_139566;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0016874 // ligase ac
FlyMine data for FBgn0035455.
Homophila reports that CG10862 is a close match (9e-11) to human gene RAD6A;UBE2A (NP_861442), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG10862 interacts with CG32581 CG8974 .
VDRC has 3 RNAi stocks for FBgn0035455 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head5 12 of 4 0.10Down
Eye6 10 of 4 0.06Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland9 40 of 4 0.10Down
Crop7 13 of 4 0.10Down
Midgut4 11 of 4 0.00Down
Tubule5 00 of 4 0.10Down
Hindgut5 11 of 4 0.10Down
Heart5 11 of 4 0.06Down
Fat body7 13 of 4 0.08Down
Ovary3 00 of 4 0.00Down
Testis1142 264 of 412.30Up
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca8 14 of 4 0.09Down
Mated spermatheca6 03 of 4 0.07Down
Adult carcass14 12 of 4 0.20Down
Larval CNS3 00 of 4 0.04Down
Larval Salivary gland2 00 of 4 0.03Down
Larval midgut7 14 of 4 0.08Down
Larval tubule3 11 of 4 0.00Down
Larval hindgut5 13 of 4 0.06Down
Larval fat body131 584 of 4 1.40None
Larval trachea10 82 of 4 0.11Down
Larval carcass5 02 of 4 0.06Down
S2 cells (growing)4 10 of 4 0.04Down
Whole fly92 14 of 4

Looking for FBgn0035455. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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