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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035458 through 18771 annotations produced 1 hits



(CG10858):

Annotation Number : CG10858
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035458
Gbrowse : chr3L:3748524-3755201 (-) // 100.0 //
Probeset : 1630267_at
Accessions : protein= NP_647826;, nucleotide= NM_139569;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005272 // sodium channel activity // inferred from electronic annotation
FlyMine data for FBgn0035458.
TRiP has 1 RNAi stocks for FBgn0035458 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035458 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.70None
Head4 ± 01 of 4 0.90None
Eye2 ± 10 of 4 0.45None
Thoracicoabdominal ganglion4 ± 00 of 4 0.90None
Salivary gland13 ± 31 of 4 2.51None
Crop9 ± 13 of 4 1.70None
Midgut12 ± 13 of 4 2.20Up
Tubule5 ± 10 of 4 0.90None
Hindgut7 ± 02 of 4 1.30None
Heart3 ± 00 of 4 0.68None
Fat body12 ± 41 of 4 2.18None
Ovary3 ± 01 of 4 0.60None
Testis2 ± 11 of 4 0.50None
Male accessory glands8 ± 22 of 4 1.60None
Virgin spermatheca2 ± 00 of 4 0.41None
Mated spermatheca6 ± 11 of 4 1.18None
Adult carcass10 ± 30 of 4 1.90None
Larval CNS4 ± 21 of 4 0.75None
Larval Salivary gland9 ± 11 of 4 1.64None
Larval midgut7 ± 02 of 4 1.43None
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut6 ± 02 of 4 1.13None
Larval fat body7 ± 11 of 4 1.30None
Larval trachea6 ± 10 of 4 1.18None
Larval carcass7 ± 04 of 4 1.31None
S2 cells (growing)6 ± 01 of 4 1.13None
Whole fly5 ± 12 of 4

Looking for FBgn0035458. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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