FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035461 through 18771 annotations produced 1 hits

nutcracker (ntc):

Annotation Number : CG10855
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035461
Gbrowse : chr3L:3803833-3806456 (-) // 100.0 //
Probeset : 1623088_at
Accessions : protein= NP_647829;, nucleotide= NM_139572;
Pathway : 0019005 // SCF ubiquitin ligase complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035461.
BDGP gene expression has embryonic in situ data for CG10855: 8 pix of staining in 2 body parts.
BioGrid reports that CG10855 interacts with CG12227 CG8979 CG15781 .
TRiP has 1 RNAi stocks for FBgn0035461 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035461 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	21 ± 2	4 of 4	0.20	Down
Head	21 ± 1	4 of 4	0.20	Down
Eye	27 ± 1	4 of 4	0.27	Down
Thoracicoabdominal ganglion	26 ± 1	4 of 4	0.30	Down
Salivary gland	50 ± 8	3 of 4	0.51	Down
Crop	32 ± 1	4 of 4	0.30	Down
Midgut	11 ± 1	0 of 4	0.10	Down
Tubule	27 ± 1	4 of 4	0.30	Down
Hindgut	31 ± 1	4 of 4	0.30	Down
Heart	48 ± 4	4 of 4	0.48	Down
Fat body	44 ± 5	4 of 4	0.44	Down
Ovary	51 ± 0	4 of 4	0.50	Down
Testis	941 ± 37	4 of 4	9.40	Up
Male accessory glands	15 ± 2	0 of 4	0.20	Down
Virgin spermatheca	21 ± 2	4 of 4	0.22	Down
Mated spermatheca	13 ± 1	2 of 4	0.13	Down
Adult carcass	50 ± 3	4 of 4	0.50	Down
Larval CNS	19 ± 3	4 of 4	0.20	Down
Larval Salivary gland	14 ± 3	3 of 4	0.14	Down
Larval midgut	9 ± 4	1 of 4	0.10	Down
Larval tubule	26 ± 4	4 of 4	0.30	Down
Larval hindgut	22 ± 1	4 of 4	0.22	Down
Larval fat body	95 ± 41	3 of 4	1.00	None
Larval trachea	19 ± 4	4 of 4	0.20	Down
Larval carcass	18 ± 1	1 of 4	0.18	Down
S2 cells (growing)	15 ± 1	4 of 4	0.16	Down
Whole fly	99 ± 2	4 of 4

Looking for FBgn0035461. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720