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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035464 through 18771 annotations produced 1 hits



(CG12006):

Annotation Number : CG12006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035464
Gbrowse : chr3L:3811268-3813967 (+) // 100.0 //
Probeset : 1633215_at
Accessions : protein= NP_647832; /// NP_995991;, nucleotide= NM_139575; /// NM_206269;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : "0000030 // mannosyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase a
FlyMine data for FBgn0035464.
BDGP gene expression has embryonic in situ data for CG12006: 73 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0035464 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035464 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain142 24 of 4 0.80None
Head134 94 of 4 0.80None
Eye225 134 of 4 1.30Up
Thoracicoabdominal ganglion107 64 of 4 0.60Down
Salivary gland38 43 of 4 0.22Down
Crop129 84 of 4 0.70Down
Midgut78 44 of 4 0.50Down
Tubule29 04 of 4 0.20Down
Hindgut78 64 of 4 0.40Down
Heart81 44 of 4 0.47Down
Fat body125 144 of 4 0.73Down
Ovary424 44 of 4 2.40Up
Testis145 84 of 4 0.80None
Male accessory glands68 44 of 4 0.40Down
Virgin spermatheca113 64 of 4 0.66Down
Mated spermatheca102 34 of 4 0.59Down
Adult carcass101 34 of 4 0.60Down
Larval CNS421 414 of 4 2.43Up
Larval Salivary gland85 64 of 4 0.49Down
Larval midgut81 24 of 4 0.47Down
Larval tubule34 24 of 4 0.20Down
Larval hindgut129 74 of 4 0.75Down
Larval fat body85 84 of 4 0.50Down
Larval trachea196 204 of 4 1.13None
Larval carcass328 364 of 4 1.89Up
S2 cells (growing)300 84 of 4 1.73Up
Whole fly173 124 of 4

Looking for FBgn0035464. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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