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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035469 through 18771 annotations produced 1 hits



(CG14977):

Annotation Number : CG14977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035469
Gbrowse : chr3L:3896898-3897498 (+) // 99.27 //
Probeset : 1635588_at
Accessions : protein= NP_647834;, nucleotide= NM_139577;
FlyMine data for FBgn0035469.
BDGP gene expression has embryonic in situ data for CG14977: 4 pix of staining in 1 body parts.
BioGrid reports that CG14977 interacts with CG5072 CG18067 .
VDRC has 2 RNAi stocks for FBgn0035469 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain269 ± 64 of 4 1.30Up
Head342 ± 104 of 4 1.60Up
Eye508 ± 224 of 4 2.43Up
Thoracicoabdominal ganglion316 ± 174 of 4 1.50Up
Salivary gland515 ± 334 of 4 2.46Up
Crop353 ± 44 of 4 1.70Up
Midgut326 ± 64 of 4 1.60Up
Tubule203 ± 74 of 4 1.00None
Hindgut346 ± 44 of 4 1.70Up
Heart312 ± 124 of 4 1.49Up
Fat body374 ± 434 of 4 1.79Up
Ovary208 ± 44 of 4 1.00None
Testis106 ± 54 of 4 0.50Down
Male accessory glands394 ± 134 of 4 1.90Up
Virgin spermatheca631 ± 324 of 4 3.02Up
Mated spermatheca683 ± 434 of 4 3.27Up
Adult carcass355 ± 114 of 4 1.70Up
Larval CNS275 ± 144 of 4 1.32Up
Larval Salivary gland372 ± 114 of 4 1.78Up
Larval midgut424 ± 184 of 4 2.03Up
Larval tubule346 ± 34 of 4 1.70Up
Larval hindgut306 ± 64 of 4 1.47Up
Larval fat body633 ± 794 of 4 3.00Up
Larval trachea351 ± 224 of 4 1.68Up
Larval carcass228 ± 94 of 4 1.10None
S2 cells (growing)278 ± 124 of 4 1.33Up
Whole fly209 ± 64 of 4

Looking for FBgn0035469. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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