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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035475 through 18771 annotations produced 1 hits



(CG10866):

Annotation Number : CG10866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035475
Gbrowse : chr3L:3937012-3937941 (-) // 100.0 //
Probeset : 1629593_at
Accessions : protein= NP_647838;, nucleotide= NM_139581;
FlyMine data for FBgn0035475.
VDRC has 2 RNAi stocks for FBgn0035475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 ± 24 of 4 1.20None
Head28 ± 44 of 4 0.50Down
Eye36 ± 14 of 4 0.70Down
Thoracicoabdominal ganglion85 ± 54 of 4 1.60Up
Salivary gland75 ± 74 of 4 1.45None
Crop33 ± 24 of 4 0.60Down
Midgut39 ± 14 of 4 0.80Down
Tubule10 ± 11 of 4 0.20Down
Hindgut57 ± 14 of 4 1.10None
Heart18 ± 24 of 4 0.35Down
Fat body28 ± 34 of 4 0.54Down
Ovary72 ± 34 of 4 1.40Up
Testis57 ± 34 of 4 1.10None
Male accessory glands23 ± 24 of 4 0.50Down
Virgin spermatheca9 ± 10 of 4 0.19Down
Mated spermatheca6 ± 11 of 4 0.13Down
Adult carcass19 ± 32 of 4 0.40Down
Larval CNS19 ± 34 of 4 0.38Down
Larval Salivary gland16 ± 14 of 4 0.32Down
Larval midgut27 ± 14 of 4 0.54Down
Larval tubule20 ± 24 of 4 0.40Down
Larval hindgut16 ± 04 of 4 0.33Down
Larval fat body29 ± 23 of 4 0.60Down
Larval trachea27 ± 44 of 4 0.53Down
Larval carcass19 ± 04 of 4 0.38Down
S2 cells (growing)29 ± 04 of 4 0.56Down
Whole fly51 ± 24 of 4

Looking for FBgn0035475. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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