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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035477 through 18771 annotations produced 1 hits



(CG14982):

Annotation Number : CG14982
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035477
Gbrowse : chr3L:3942849-3946457 (+) // 100.0 //
Probeset : 1635797_at
Accessions : protein= NP_647841;, nucleotide= NM_139584;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035477.
BDGP gene expression has embryonic in situ data for CG14982: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035477 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 ± 34 of 436.80Up
Head18 ± 32 of 4 7.60Up
Eye10 ± 12 of 4 4.17Up
Thoracicoabdominal ganglion40 ± 44 of 416.30Up
Salivary gland9 ± 20 of 4 3.84None
Crop1 ± 00 of 4 0.60None
Midgut1 ± 00 of 4 0.60None
Tubule3 ± 00 of 4 1.40Up
Hindgut2 ± 10 of 4 1.10None
Heart1 ± 10 of 4 0.61None
Fat body7 ± 60 of 4 3.06None
Ovary0 ± 00 of 4 0.20None
Testis26 ± 14 of 410.70Up
Male accessory glands1 ± 00 of 4 0.70None
Virgin spermatheca5 ± 00 of 4 2.05Up
Mated spermatheca5 ± 21 of 4 2.16None
Adult carcass1 ± 00 of 4 0.60None
Larval CNS22 ± 14 of 4 9.07Up
Larval Salivary gland2 ± 00 of 4 0.94None
Larval midgut2 ± 00 of 4 0.90None
Larval tubule3 ± 10 of 4 1.20None
Larval hindgut2 ± 00 of 4 0.91None
Larval fat body4 ± 00 of 4 1.60None
Larval trachea2 ± 20 of 4 1.18None
Larval carcass2 ± 00 of 4 0.84None
S2 cells (growing)2 ± 10 of 4 1.14None
Whole fly2 ± 00 of 4

Looking for FBgn0035477. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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