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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035481 through 18771 annotations produced 1 hits



(CG12605):

Annotation Number : CG12605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035481
Gbrowse : chr3L:3956849-3964771 (-) // 99.59 //
Probeset : 1623944_at
Accessions : protein= NP_647845; /// NP_995996; /// NP_995997;, nucleotide= NM_139588; /// NM_206274; /// NM_206275;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0035481.
BDGP gene expression has embryonic in situ data for CG12605: 4 pix of staining in 1 body parts.
Homophila reports that CG12605 is a close match (9e-11) to human gene GLIS2;NPHP7 (NP_115964), a gene associated with Nephronophthisis 7, 611498 (3).
TRiP has 1 RNAi stocks for FBgn0035481 available for purchase.
VDRC has 4 RNAi stocks for FBgn0035481 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain756 224 of 439.90Up
Head112 44 of 4 5.90Up
Eye207 264 of 410.92Up
Thoracicoabdominal ganglion591 314 of 431.20Up
Salivary gland15 42 of 4 0.81None
Crop4 10 of 4 0.20Down
Midgut0 00 of 4 0.00Down
Tubule3 00 of 4 0.20Down
Hindgut3 10 of 4 0.20Down
Heart4 10 of 4 0.22Down
Fat body13 34 of 4 0.70None
Ovary1 00 of 4 0.10Down
Testis2 00 of 4 0.10Down
Male accessory glands6 00 of 4 0.30Down
Virgin spermatheca9 12 of 4 0.49Down
Mated spermatheca10 22 of 4 0.55Down
Adult carcass9 31 of 4 0.50Down
Larval CNS214 494 of 411.34Up
Larval Salivary gland6 20 of 4 0.33Down
Larval midgut0 00 of 4 0.04Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut3 11 of 4 0.18Down
Larval fat body3 20 of 4 0.20Down
Larval trachea5 41 of 4 0.27Down
Larval carcass2 10 of 4 0.12Down
S2 cells (growing)1 11 of 4 0.10Down
Whole fly19 24 of 4

Looking for FBgn0035481. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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