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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035482 through 18771 annotations produced 1 hits



(CG14985):

Annotation Number : CG14985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035482
Gbrowse : chr3L:4003471-4006626 (+) // 100.0 //
Probeset : 1636713_at
Accessions : protein= NP_647846;, nucleotide= NM_139589;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035482.
BioGrid reports that CG14985 interacts with CG9992 CG17894 CG6058 .
VDRC has 2 RNAi stocks for FBgn0035482 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 00 of 4 2.40Up
Head2 ± 10 of 4 0.70None
Eye3 ± 10 of 4 1.00None
Thoracicoabdominal ganglion8 ± 10 of 4 2.20None
Salivary gland6 ± 10 of 4 1.78None
Crop8 ± 20 of 4 2.10None
Midgut19 ± 40 of 4 5.00Up
Tubule10 ± 10 of 4 2.70Up
Hindgut10 ± 10 of 4 2.60Up
Heart5 ± 10 of 4 1.45None
Fat body7 ± 30 of 4 1.90None
Ovary4 ± 10 of 4 1.20None
Testis2 ± 00 of 4 0.70None
Male accessory glands10 ± 30 of 4 2.60None
Virgin spermatheca9 ± 20 of 4 2.41None
Mated spermatheca6 ± 20 of 4 1.79None
Adult carcass8 ± 30 of 4 2.10None
Larval CNS7 ± 10 of 4 2.03None
Larval Salivary gland7 ± 10 of 4 1.85None
Larval midgut17 ± 22 of 4 4.43Up
Larval tubule13 ± 00 of 4 3.30Up
Larval hindgut9 ± 20 of 4 2.31None
Larval fat body12 ± 40 of 4 3.20None
Larval trachea4 ± 10 of 4 1.13None
Larval carcass5 ± 10 of 4 1.48None
S2 cells (growing)9 ± 10 of 4 2.57Up
Whole fly3 ± 10 of 4

Looking for FBgn0035482. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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